PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001828
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 285aa    MW: 31495.3 Da    PI: 5.5435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001828genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-05160206455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +   +r RR +i ++++ L el P +   +++K s ++   + +++Ik+Lq
  PGSC0003DMP400001828 160 RAALSDRHRRMKISERIDALGELFPCS--KQGGKTSQMD---EIIDHIKYLQ 206
                           556779********************6..4999999775...8899999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-8154214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-6154208No hitNo description
SuperFamilySSF474591.96E-9155215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.566156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGEQNQPNSL GTQWALLGST NDSYYLAGHE LNKQYMAGVG IDGIHYVPVP SPQWINDQQT  60
PHNYVEYLAE NVVSEAQVDA SVVASGFRLL EGSADMISQE IRYPRPYHED VPPNRLNGSE  120
HQRGALTWEP RGNVRLASGP CSEASAAGSS YPSKSSRKAR AALSDRHRRM KISERIDALG  180
ELFPCSKQGG KTSQMDEIID HIKYLQFQMK DLSRSRLGGE PTSIPFVFLE GCGHYSLDEQ  240
QIEPLEDTMG KLLEVNPSMA TQLLESKGLF VMPMALAEGL HHHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001828
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-134HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355867.10.0PREDICTED: uncharacterized protein LOC102578458 isoform X2
TrEMBLM0ZK860.0M0ZK86_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000025120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96461617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-17LJRHL1-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]