PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400001752 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 139aa MW: 15924.2 Da PI: 9.563 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.6 | 1.6e-29 | 6 | 58 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtp+LHe F+e+v+ LGG +kAtPk+i ++m vkgL ++hvkSHLQ+YR PGSC0003DMP400001752 6 PRLRWTPQLHELFIEVVQLLGGGHKATPKRIQQMMAVKGLKISHVKSHLQMYR 58 8**************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.857 | 2 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 3 | 60 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-23 | 6 | 59 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.51E-14 | 6 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-9 | 7 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MKSSIPRLRW TPQLHELFIE VVQLLGGGHK ATPKRIQQMM AVKGLKISHV KSHLQMYRNL 60 KERGNLNIVN SVNNFHEETP QFSWSSPYEH VSETILEHGP SKSSKQIDPG SDKFPNYKAI 120 INAYIAENNI YCYDYQVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-18 | 7 | 63 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-18 | 7 | 63 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-18 | 7 | 63 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-18 | 7 | 63 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-18 | 7 | 63 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-18 | 7 | 63 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-18 | 7 | 63 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-18 | 7 | 63 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400001752 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 2e-57 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366621.1 | 6e-98 | PREDICTED: uncharacterized protein LOC102600799 | ||||
TrEMBL | M0ZK31 | 6e-99 | M0ZK31_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002410 | 2e-97 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 7e-24 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400001752 |
Publications ? help Back to Top | |||
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