PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400001649

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 204aa MW: 23544.5 Da PI: 6.8834

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400001649	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	36	87	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++ ae++ +LA+ lgL+ rqV +WFqNrRa++k PGSC0003DMP400001649 36 RRLNMEQVKTLEKNFELGNKLEAERKVQLARALGLQPRQVAIWFQNRRARWK 87 57899**********************************************9 PP
2	HD-ZIP_I/II	123.7	9e-40	34	124	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 k rrl+ eqvk+LE++Fe +kLe erKv+lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k++ne+L +++++L+ e PGSC0003DMP400001649 34 KIRRLNMEQVKTLEKNFELGNKLEAERKVQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKREFDAIKAQNEALLAHNHKLHVE 122 669***********************************************************************************998 PP HD-ZIP_I/II 91 lk 92 ++ PGSC0003DMP400001649 123 IM 124 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.601	29	89	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-19	30	91	IPR009057	Homeodomain-like
SMART	SM00389	7.3E-17	32	93	IPR001356	Homeobox domain
CDD	cd00086	1.46E-14	33	90	No hit	No description
Pfam	PF00046	9.4E-16	36	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.0E-19	37	96	IPR009057	Homeodomain-like
PRINTS	PR00031	5.2E-6	60	69	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	64	87	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.2E-6	69	85	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.7E-15	89	128	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSFSNKCDDQ NHGDQEDVLS DDGTHHEAIL REKKIRRLNM EQVKTLEKNF ELGNKLEAER 60 KVQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDYDVLKR EFDAIKAQNE ALLAHNHKLH 120 VEIMTLKNGK GPTESINLNK ETDQGSICST RSENSSEIIK LQCNNMKLMD QTVKEETLSN 180 IFSGIDDNSA GFWPWLDQQP HFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	89	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400001649

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006363937.1	1e-150	PREDICTED: homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-65	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	M0ZJV0	1e-149	M0ZJV0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400002259	1e-149	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	6e-68	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400001649

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]