PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001648
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 236aa    MW: 27361.7 Da    PI: 6.5876
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001648genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-1868119556
                           SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           ++++ eq+++Le+ Fe  +++ ae++ +LA+ lgL+ rqV +WFqNrRa++k
  PGSC0003DMP400001648  68 RRLNMEQVKTLEKNFELGNKLEAERKVQLARALGLQPRQVAIWFQNRRARWK 119
                           57899**********************************************9 PP
2HD-ZIP_I/II123.21.3e-3966156292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           k rrl+ eqvk+LE++Fe  +kLe erKv+lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k++ne+L +++++L+ e
  PGSC0003DMP400001648  66 KIRRLNMEQVKTLEKNFELGNKLEAERKVQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKREFDAIKAQNEALLAHNHKLHVE 154
                           669***********************************************************************************998 PP

           HD-ZIP_I/II  91 lk 92 
                           ++
  PGSC0003DMP400001648 155 IM 156
                           87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.60161121IPR001356Homeobox domain
SuperFamilySSF466892.52E-1962123IPR009057Homeodomain-like
SMARTSM003897.3E-1764125IPR001356Homeobox domain
CDDcd000866.90E-1565122No hitNo description
PfamPF000461.2E-1568119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-1969128IPR009057Homeodomain-like
PRINTSPR000316.5E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000316.5E-6101117IPR000047Helix-turn-helix motif
PfamPF021833.4E-15121160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDFFPTNFML HTPHEDNHQD FHGVTSFLEK KSMSFSNKCD DQNHGDQEDV LSDDGTHHEA  60
ILREKKIRRL NMEQVKTLEK NFELGNKLEA ERKVQLARAL GLQPRQVAIW FQNRRARWKT  120
KQLEKDYDVL KREFDAIKAQ NEALLAHNHK LHVEIMTLKN GKGPTESINL NKETDQGSIC  180
STRSENSSEI IKLQCNNMKL MDQTVKEETL SNIFSGIDDN SAGFWPWLDQ QPHFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001648
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363937.11e-176PREDICTED: homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC032e-76ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLM0ZJU91e-175M0ZJU9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000022591e-176(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.16e-79HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]