PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400001571

Common Name

LOC102582354

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 313aa MW: 34997.4 Da PI: 6.4452

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400001571	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.4	3e-14	111	157	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L PGSC0003DMP400001571 111 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 157 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	108	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	111	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-15	112	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-15	112	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	114	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.02E-5	121	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MHPQSFMNPV HFQSNSEMLP WSIPPVQPYL NPVHHHDQSF LLPPSPSAYG LFNRNTTMDQ 60 QHLRFISDSL VGQVVHHHNQ PGSIAPFGLQ AELQKMSAQE IMDAKALAAS KSHSEAERRR 120 RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLISETSLV PTEIDELTVD 180 NATSDEDGKF LIKASLCCED RSDLLPDLIK TLKALRLKTL KAEITTLGGR VRNVLFITGD 240 DYYCDDSNNN RDHIDPCTSG DDEDTQMMQQ QPQYCISSIQ EALKAVMEKS SGDDSASTSV 300 KRQRTNSINI LS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	121	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400001571

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362528.1	0.0	PREDICTED: transcription factor bHLH30
Swissprot	Q9S7Y1	5e-93	BH030_ARATH; Transcription factor bHLH30
TrEMBL	M0ZJQ7	0.0	M0ZJQ7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400002155	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400001571
Entrez Gene	102582354

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]