PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001569
Common NameLOC107057911
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 355aa    MW: 40647.3 Da    PI: 8.8351
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001569genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1241.7e-381372442112
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.. 88 
                           +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWL+ ++k aikel ++  ++++++   s++++++ ++ +  
  PGSC0003DMP400001569 137 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLFSKSKNAIKELSRN-IPQENNS---SDQNNDDDDHRKlr 221
                           79**************************************************************.3333233...22222222222242 PP

                   TCP  89 .........kaaksaakskksqksaasalnlak 112
                                    +          ++++++ + +l +
  PGSC0003DMP400001569 222 kigssdkpiR----------KKTREKMMIKLGH 244
                           3323333342..........3333332333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-37137252IPR005333Transcription factor, TCP
PROSITE profilePS5136936.873139197IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MFPKSNIIHD PFTYTTQELL KQSYNTHDQN PNSPSKVVED EDHPFFLNNF FPSPFLDDHE  60
LPLSQIFSQK HHQKQEVSDN HDINQDNTIK DNYHSVDNSR STLLNMKIMG DQSSNPAILS  120
SPSSKKRKQS AKPRRRTGKK DRHSKICTAQ GVRDRRMRLS LQIARKFFDL QDMLGFDKAS  180
NTIEWLFSKS KNAIKELSRN IPQENNSSDQ NNDDDDHRKL RKIGSSDKPI RKKTREKMMI  240
KLGHNKKCNQ ELDETNPISS TIDHKLGSNS KSLEHQFANV GIMERYLGGA SYSSITSIFD  300
YDNNGVVKGD IDISNNCFNM GILENCSMTN EVQIPFSGNN PSSIYLDNSR FHQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125135KRKQSAKPRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158529.10.0PREDICTED: transcription factor TCP12-like
TrEMBLM0ZJQ60.0M0ZJQ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000021530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-32TCP domain protein 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]