PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400001544 | ||||||||
Common Name | LOC102583361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 436aa MW: 48988 Da PI: 4.6361 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.4 | 3.4e-33 | 56 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lp+G++F+Ptd+e++ +L kveg + + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ PGSC0003DMP400001544 56 LPRGVKFDPTDQEII-WHLLGKVEGGDrnshpfI--DEFIPTVDeddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIH 140 799************.567777777775765332..334555544556**********.677888899******************855 PP NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l PGSC0003DMP400001544 141 gdnsgDVRWHKTGRTKPVIL-DGIQRGCKKIMVLYisPSKGGKAEKTNWVMHQYHL 195 45544778************.99************6534677788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-39 | 42 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.497 | 56 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-14 | 57 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MARPSWLVDS RRIATKIKSA SGDPATVNWK SNPTKACPNC QFIIDNNDVS HDWPGLPRGV 60 KFDPTDQEII WHLLGKVEGG DRNSHPFIDE FIPTVDEDDG ICYTHPQNLP GVKQDGSVSH 120 FFHRAIKAYN TGTRKRRKIH GDNSGDVRWH KTGRTKPVIL DGIQRGCKKI MVLYISPSKG 180 GKAEKTNWVM HQYHLGTGED EREGEYVVSK VFYQQQQVKQ GEKIEQEFPE DSECMVAKVD 240 PHTPKSVTPE PPRGERLSSS MDAREQIAAS SPINQYHEVE DYVEDDMGSL PEQPENQDQN 300 IENQIDETGT KVETETGDDP KWWDSESQYL LDSQQLVEGL SLCDDLLASQ SPNRDGNEND 360 QVHKCKPSLA DYARLGPEDL KKDLEECQQF VADPANIEIG TPPDFRLSQL EFGSQDSYIA 420 WGGNKYGFDS AEQNG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400001544 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362531.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-178 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | M0ZJN3 | 0.0 | M0ZJN3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002122 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-180 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400001544 |
Entrez Gene | 102583361 |