PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001390
Common NameLOC102589204
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 443aa    MW: 49692.4 Da    PI: 5.824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001390genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09247294455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400001390 247 SHSLAERVRREKISERMRFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 294
                           8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16241310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-10241298No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16243310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6247294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MNIALPEMLH NNTTSNGGNG SSVLERQPAR MKWHQEQVQQ QEMSYFNGQN DQLMSSFHQT  60
SEAQQFHGLI NVNDQSLNEL VTRAIKPDPC MENNWDDFGT TDNNGFGYVP VGVGHGGMSH  120
PTEMNYAISR TTSCPPTMAD NAVKSKETML SSNRGSENFK KRKADKNQHL KEVAEEETKD  180
KKLKECIEEG DDSSKVTTEK KSNKRSANNS SNSKENSDTS KEKSKITDDK KLDYIHVRAR  240
RGQATDSHSL AERVRREKIS ERMRFLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL  300
SMKLAAVNPR LDIDVDNFFN KDIFATSTST FSTVGAGTSS EMLSMAQRQF NSLQQIMSSS  360
GLEMDILNLN EMALRRTTSA PVPIPEMFLD SSSINQVQSF QTWDTDLDNM YAMELQQGRS  420
AQFFPHPCTG FAEAGHDLKM EM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0143000.0BT014300.1 Lycopersicon esculentum clone 133550R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365113.10.0PREDICTED: transcription factor HBI1-like
TrEMBLM0ZJ900.0M0ZJ90_SOLTU; Basic helix-loop-helix 7
STRINGPGSC0003DMT4000018880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65382330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-56cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]