PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400001342 | ||||||||
Common Name | LOC102583010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 21447 Da PI: 5.8565 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 19 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + +r++lg+f+tae+Aa+a++ a+++l+g PGSC0003DMP400001342 19 PRYRGVRKRP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARALRG 69 68********.**********72....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.6E-14 | 19 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.32E-20 | 19 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.9E-33 | 20 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 20 | 78 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.0E-38 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.327 | 20 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MRHRKSSELK RPGSDADPPR YRGVRKRPWG RFAAEIRDPI KKTRVWLGTF DTAEDAARAY 60 DDAARALRGP KAKTNFNMLP LTEDSYDEAN QFELFPNSRP ASSSMSSTLE SSSGPLGGSS 120 CKVTRMKIPR PVLPLEDCRS DCDSSSSVVD DRCDVDQTSS FLAKQPLPFD LNLPPPSDND 180 GVDVDDLHVT ALCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-21 | 13 | 76 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400001342 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357978.1 | 1e-139 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 3e-32 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | M0ZJ53 | 1e-138 | M0ZJ53_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400001820 | 1e-139 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13779 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-21 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400001342 |
Entrez Gene | 102583010 |
Publications ? help Back to Top | |||
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