PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400000880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 68aa MW: 8093.17 Da PI: 11.3443 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.8 | 1.7e-10 | 6 | 47 | 12 | 56 |
AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 r r+ A I+dp++ r++++l++f+ e+Aa+a++ a+++++ + PGSC0003DMP400000880 6 RRRYKADIKDPVQ---RRSVWLNTFDASEKAARAYDTAARRYHSH 47 689*******755...5*************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.697 | 1 | 54 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 2 | 55 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-7 | 2 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-12 | 3 | 55 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.1E-5 | 8 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 68 aa Download sequence Send to blast |
MRKMPRRRYK ADIKDPVQRR SVWLNTFDAS EKAARAYDTA ARRYHSHKAV TKFPQDNLRD 60 FHEKSSR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400000880 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015164910.1 | 3e-30 | PREDICTED: ethylene-responsive transcription factor 10-like | ||||
Swissprot | Q9FE67 | 2e-14 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | M0ZI20 | 3e-41 | M0ZI20_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400001183 | 6e-42 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28370.1 | 4e-08 | ERF domain protein 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400000880 |
Publications ? help Back to Top | |||
---|---|---|---|
|