PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000873
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 257aa    MW: 27941.8 Da    PI: 9.0857
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000873genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.2e-391473362
                zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                          e+ lkcprCds+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  PGSC0003DMP400000873 14 EAGLKCPRCDSSNTKFCYFNNYSLSQPRHFCKNCRRYWTRGGALRNVPVGGGCRRNKRNK 73
                          6779*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-29164IPR003851Zinc finger, Dof-type
PfamPF027011.1E-321671IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.8511771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MADRARIAKL SLPEAGLKCP RCDSSNTKFC YFNNYSLSQP RHFCKNCRRY WTRGGALRNV  60
PVGGGCRRNK RNKSSNNNNS AKSGGGGGQV GNTTNNASTS AIPSSCNMEM IGHHFSQSST  120
QFTSLMGAFQ NLNNYGGLIQ PPPHQLVGEM GFQIGSNNLL PSLVASNNFE HPTNLYPNFQ  180
NEGPTTTTTT IEASNGVTQQ VKMEDNNRQG MDSSTKQFLG TLENNNQYWG VANENSWIGF  240
SSDLNNNSPS TTNHLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000873
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348997.20.0PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBLM0ZI130.0M0ZI13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000011740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.13e-37OBF-binding protein 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]