PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000756
Common NameLOC102592818
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 369aa    MW: 40974 Da    PI: 6.0746
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000756genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35101022103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F++k+y++++d++++ li w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+
  PGSC0003DMP400000756  10 FVMKTYQMVNDPKIDGLIAWGTANNSFIVVEPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQ 89 
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           ++ll++i rkk++
  PGSC0003DMP400000756  90 THLLKNIVRKKHS 102
                           **********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.6E-49699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-36899IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-291099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEANNIIAPF VMKTYQMVND PKIDGLIAWG TANNSFIVVE PLDFSQRILP VYFKHNNFSS  60
FVRQLNTYGF RKVDPDKWEF ANEWFLRGQT HLLKNIVRKK HSRNSCSQKQ DESEDEEIFT  120
EISRLKQEQK VLDHEVENMT RRLEATEKRP QQMMAFLCKV VDDPEILPRI LMEKEKSKRL  180
SLTNREKKRR LMISNSTSCS SVKSEDAVGA TSSFHSPDAN FDKDAICQSS PSSGTPPPPA  240
WLGCRPMITY EPGTIQSIRS PDANFDKDTF YQSSPSSETP STAWMSQQKV VIGGRPMMMT  300
NEAYGSCPTM SSTLSTGSSE SGGFTAPPMD NFYGYDYGGG GGGGGGGTTA TEEASPPPYP  360
FSLFGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-237997110Heat shock factor protein 1
5hdn_A1e-237997110Heat shock factor protein 1
5hdn_B1e-237997110Heat shock factor protein 1
5hdn_C1e-237997110Heat shock factor protein 1
5hdn_D1e-237997110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000756
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353456.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV521e-88HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLM0ZHR40.0M0ZHR4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000010250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-90heat shock transcription factor C1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]