PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000728
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 305aa    MW: 33339.8 Da    PI: 4.6932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000728genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-1781129355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  PGSC0003DMP400000728  81 YVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAAMSIKG 129
                           99***998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.91880137IPR001471AP2/ERF domain
PfamPF008472.9E-1180129IPR001471AP2/ERF domain
SMARTSM003807.7E-3480143IPR001471AP2/ERF domain
CDDcd000181.10E-3081137No hitNo description
SuperFamilySSF541711.05E-1981137IPR016177DNA-binding domain
PRINTSPR003671.4E-88192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-3081138IPR001471AP2/ERF domain
PRINTSPR003671.4E-8103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSTEQPNCSE STESSCNSSS SSPPSSPSFV LLQPLPQINS KNRLKRCRGE EEEVNEVVNN  60
ANPNPKKISK NNNGGSTDVS YVGVRMRAWG KWVSEIREPK KKSRIWLGTF ATPEMAARAH  120
DVAAMSIKGT SAILNFPQFS HLLPRPATCS PRDVQSAAVK AAHMDHLNPK NSSSSCSTST  180
SLLPEPSPAS MTSSSSSLSL ASGITSSSSC EKDDEESRPS PLEEVFLVPE ATGQLSEIVE  240
LPRLGSSYEL VESTQSLFES DEWWDNNYGN CEYYFGQENY ISNMEFTGLE NVVSTSFESF  300
LWQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1775138973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000728
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166849.10.0PREDICTED: ethylene-responsive transcription factor ERF037-like
TrEMBLM0ZHP20.0M0ZHP2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-45ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]