PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000691
Common NameLOC102604761
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 290aa    MW: 33065.6 Da    PI: 5.3999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000691genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++eEd +l+++ ++ G+g +W + +++ g++R++k+c++rw++yl
  PGSC0003DMP400000691 14 RGPWSPEEDNILKNYLEKNGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                          89*********************************************97 PP
2Myb_DNA-binding45.31.9e-1469111246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g +T+eEd +++ + +q G++ W+ Ia+ ++ +Rt++++k++w++
  PGSC0003DMP400000691  69 GGFTEEEDNIILTLYRQIGSR-WSVIAANLP-RRTDNDVKNHWNT 111
                           569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.765962IPR017930Myb domain
SuperFamilySSF466898.59E-2712109IPR009057Homeodomain-like
SMARTSM007171.8E-111364IPR001005SANT/Myb domain
PfamPF002496.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-231569IPR009057Homeodomain-like
CDDcd001673.21E-81662No hitNo description
PROSITE profilePS5129422.67763117IPR017930Myb domain
SMARTSM007171.7E-1367115IPR001005SANT/Myb domain
PfamPF002497.5E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2370116IPR009057Homeodomain-like
CDDcd001672.17E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDNILKNYLE KNGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIL TLYRQIGSRW SVIAANLPRR TDNDVKNHWN TKLKKKHLAA  120
QNNNFLDIGY NFTNNINSSD LNHNYSRNYY GKLDYSNTFT SHMDPNVTNY SSKNCDQFPL  180
PTLMEIQEND ATIQSVQEDS SLDSCQILQK YVTFEETNMC ASTFLKSTSN TSCNYMDLSS  240
GISSSSSYYD DILENGFDFQ ENDIGGVDPN SSYYNNILEI DQLFKGFEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24141167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000691
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353580.10.0PREDICTED: transcription factor WER-like
TrEMBLM0ZHL60.0M0ZHL6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-70myb domain protein 36
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]