PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000653
Common NameLOC102591248
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 311aa    MW: 35351.3 Da    PI: 8.9599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000653genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12141186454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h + ErrRR+++N+ f+ Lr+llP+       K +Ka++L  ++eY++sL
  PGSC0003DMP400000653 141 HHMISERRRREKLNENFQHLRSLLPPE-----IKKDKASVLASTTEYLSSL 186
                           68899*********************8.....699**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.33E-10137191No hitNo description
PROSITE profilePS5088814.557137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-15139203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-15140203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10141186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-12143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009690Biological Processcytokinin metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0016614Molecular Functionoxidoreductase activity, acting on CH-OH group of donors
GO:0019139Molecular Functioncytokinin dehydrogenase activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSIDQNLHSS SSSSSEYSSL FHNVAKTCYV TQENQTLTQF PKIEGEDDVI RQAYLAVISS  60
SSPSSSSRGQ IQEILTRDHR LVTRNTTAFT RFRSTNYASI GATSSCRQNM LKRSITFFKN  120
LYTMNRQEGI QVNRAMSTQV HHMISERRRR EKLNENFQHL RSLLPPEIKK DKASVLASTT  180
EYLSSLKDQV EKLCKRNEIL EATLLSKKEV SQFQQNGSGR VYIYITNIEE RIVDLQVIAK  240
GKCNTLDLVI CLMEFLKMAS YVNLMAIDAN TTMVQSCPLT QITLRLRIQG DEWDESTFLE  300
ATKKVVGDMT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150ERRRRE
2146151RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000653
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353540.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLM0ZHH80.0M0ZHH8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000008830.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-40bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]