PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400000652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 700aa MW: 79315 Da PI: 8.5379 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.5e-12 | 536 | 581 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N+ f+ Lr+llP+ K +Ka++L ++eY++sL PGSC0003DMP400000652 536 HHMISERRRREKLNENFQHLRSLLPPE-----IKKDKASVLASTTEYLSSL 581 68899*********************8.....699**************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.43.10 | 1.1E-6 | 25 | 105 | IPR016167 | FAD-binding, type 2, subdomain 1 |
SuperFamily | SSF56176 | 1.96E-35 | 28 | 226 | IPR016166 | FAD-binding, type 2 |
PROSITE profile | PS51387 | 13.387 | 46 | 229 | IPR016166 | FAD-binding, type 2 |
PROSITE pattern | PS00862 | 0 | 50 | 85 | IPR006093 | Oxygen oxidoreductase covalent FAD-binding site |
Pfam | PF01565 | 2.0E-16 | 50 | 198 | IPR006094 | FAD linked oxidase, N-terminal |
Gene3D | G3DSA:3.30.465.10 | 1.2E-8 | 142 | 225 | IPR016169 | CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 |
Pfam | PF09265 | 2.3E-68 | 230 | 409 | IPR015345 | Cytokinin dehydrogenase 1, FAD/cytokinin binding domain |
SuperFamily | SSF55103 | 6.02E-45 | 230 | 408 | IPR016164 | FAD-linked oxidase-like, C-terminal |
Gene3D | G3DSA:3.40.462.10 | 1.8E-71 | 232 | 411 | IPR016170 | Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain |
PROSITE profile | PS50888 | 14.557 | 532 | 581 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.46E-12 | 532 | 586 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-14 | 534 | 598 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-14 | 535 | 598 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 536 | 581 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-12 | 538 | 587 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009690 | Biological Process | cytokinin metabolic process | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0016614 | Molecular Function | oxidoreductase activity, acting on CH-OH group of donors | ||||
GO:0019139 | Molecular Function | cytokinin dehydrogenase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 700 aa Download sequence Send to blast |
MSNLGKLKSW NPSIPQEIFS LNISSKLSTN SDDIKESSKD FGKIVQKKFP AAVLYPSCVN 60 DIIDLIQFSY DLSVPFQVAA KGHGHSIRGQ AMAQNGVIVE MNSLNNNNNE NCGVRVSWDL 120 DLGFYADVGG EQLWIDVLRS TLEYGLAPVS WTDYLYLTVG GTLSNAGISG QTFRYGPQIS 180 NVHEMDVITG KGELVTCSKD KNSELFFGVL GGLGQFGIII RAKIVLDKAP TRVKWVRMLY 240 DDFPKFTKDQ EYLISIHHNG LDYVEGSLMM EQSSLNNWRS SFFSPSNQAK IVSLLSQNKI 300 MYCLEMVKYY DDHTANTIDE ELKKLVQGLN YLGGFMFKKD VTFVEFLNRV RKGQIELELK 360 GMWDVPHPWL NLFVPKSNIM QFNAAVFEDI ILRQNKPTGP ILVYPTSRKS EYSSLFHNVA 420 KTCYVTQENQ TLTQFPKIEG EDDVIRQAYL AVISSSSPSS SSRGQIQEIL TRDHRLVTRN 480 TTAFTRFRST NYASIGATSS CRQNMLKRSI TFFKNLYTMN RQEGIQVNRA MSTQVHHMIS 540 ERRRREKLNE NFQHLRSLLP PEIKKDKASV LASTTEYLSS LKDQVEKLCK RNEILEATLL 600 SKKEVSQFQQ NGSGRVYIYI TNIEERIVDL QVIAKGKCNT LDLVICLMEF LKMASYVNLM 660 AIDANTTMVQ SCPLTQITLR LRIQVIYVSH SVFDICIGD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4o95_A | 1e-138 | 28 | 408 | 27 | 412 | Cytokinin dehydrogenase 4 |
4oal_A | 1e-138 | 28 | 408 | 27 | 412 | Cytokinin dehydrogenase 4 |
4oal_B | 1e-138 | 28 | 408 | 27 | 412 | Cytokinin dehydrogenase 4 |
5hhz_A | 1e-138 | 28 | 408 | 27 | 412 | Cytokinin dehydrogenase 4 |
5hmr_A | 1e-138 | 28 | 408 | 27 | 412 | Cytokinin dehydrogenase 4 |
5hqx_A | 1e-138 | 28 | 408 | 27 | 412 | Cytokinin dehydrogenase 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 540 | 545 | ERRRRE |
2 | 541 | 546 | RRRREK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Catalyzes the oxidation of cytokinins, a family of N(6)-substituted adenine derivatives that are plant hormones, where the substituent is an isopentenyl group. {ECO:0000269|PubMed:14555694}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400000652 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Regulated by GATA18/HAN. {ECO:0000269|PubMed:26390296}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ751239 | 0.0 | FJ751239.1 Solanum tuberosum cytokinin oxidase/dehydrogenase 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769668.1 | 0.0 | cytokinin dehydrogenase 3-like | ||||
Swissprot | Q9LTS3 | 1e-156 | CKX3_ARATH; Cytokinin dehydrogenase 3 | ||||
TrEMBL | M0ZHH7 | 0.0 | M0ZHH7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000883 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56960.1 | 6e-30 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400000652 |