PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000613
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CPP
Protein Properties Length: 489aa    MW: 53303.4 Da    PI: 7.818
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000613genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.1e-1474113242
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                           ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  PGSC0003DMP400000613  74 KQKQCNCKHSRCLKLYCECFASGVYCDG-CNCNNCHNNVEN 113
                           89**************************.********9875 PP
2TCR51.22.4e-16158197140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  PGSC0003DMP400000613 158 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 197
                           589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.1E-1673113IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.93274198IPR005172CRC domain
PfamPF036381.5E-1175110IPR005172CRC domain
SMARTSM011148.4E-20158199IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.0E-13161196IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MTTSGTQIVP VKLTPVQRPQ LQPPPQPQQH IVLMPMKQTA VPPNHPSIRP PKPESPRARP  60
RQSASEVKDG TPKKQKQCNC KHSRCLKLYC ECFASGVYCD GCNCNNCHNN VENEPARREA  120
VEATLERNPH AFRPKIASSP HGARDNKEET GDGLVLAKHN KGCHCKKSGC LKKYCECFQA  180
NILCSENCKC MDCKNFEGSE ERQALFHGDH ANNMAYLQQA ANAAITGAIG SSGYGSPPVN  240
RKRKSQELFF ASTIKDPVHR HGQLQQGNHI KSSVLPSLSS SPGPCVGNAT TVGPSKFTYR  300
SLLEDLIQPQ DLKELCSVLV VYSGEAAKML ADEKDASKKQ AEGQTEASLA SSTQERVQNQ  360
KDSGSEKDML DCCSSGDQGE KISMEESSLD GADVSKRRPM SPGTLALMCD ESDTMFAAAI  420
TSPNDLATLG CNTSSQLPHG QGMTETYAEQ ERIVLTKFRD CLNRLVTLGE IKGNFFSFLF  480
CLNLVLIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-32662072132Protein lin-54 homolog
5fd3_B3e-32662072132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000613
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353466.20.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLM0ZHE00.0M0ZHE0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000008240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-173Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]