PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400000547 | ||||||||
Common Name | LOC102595015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 253aa MW: 28107.3 Da PI: 9.1768 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.3 | 2.2e-32 | 116 | 172 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hA++R RgsgGrF PGSC0003DMP400000547 116 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 172 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-35 | 114 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.798 | 115 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.0E-23 | 118 | 140 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.9E-28 | 118 | 172 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 120 | 140 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.0E-23 | 149 | 172 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MKSLDPDLQG ETLRLTHSTL NSQDEMTASG KTHSQDQCAS SDYVHDERYG REMQVQIKPA 60 LFSLQNEVAH STGFSAFGYS DPYISGLYTA YGPQPYPHMM GIAPARVPLP IDMAEDGPIY 120 VNAKQYHGIL RRRQIRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKVHQ 180 SDPNSYPTNS TSSLDSVEHE GSTSAFSSVR QDVVHNGINF QQQPDHMAFS VSSHMVITMQ 240 GNGSQQRAPV VR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-22 | 116 | 185 | 2 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400000547 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-145 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 1e-145 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166862.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_015166863.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_015166864.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_015166865.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
TrEMBL | M0ZH82 | 0.0 | M0ZH82_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g009050.1.1 | 1e-179 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72830.1 | 1e-40 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400000547 |
Entrez Gene | 102595015 |
Publications ? help Back to Top | |||
---|---|---|---|
|