PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000546
Common NameLOC102595015
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 253aa    MW: 28107.3 Da    PI: 9.1768
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000546genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.2e-32116172158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  PGSC0003DMP400000546 116 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 172
                           57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-35114175IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.798115175IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-23118140IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.9E-28118172IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860120140IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-23149172IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKSLDPDLQG ETLRLTHSTL NSQDEMTASG KTHSQDQCAS SDYVHDERYG REMQVQIKPA  60
LFSLQNEVAH STGFSAFGYS DPYISGLYTA YGPQPYPHMM GIAPARVPLP IDMAEDGPIY  120
VNAKQYHGIL RRRQIRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKVHQ  180
SDPNSYPTNS TSSLDSVEHE GSTSAFSSVR QDVVHNGINF QQQPDHMAFS VSSHMVITMQ  240
GNGSQQRAPV VR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-22116185274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000546
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-145HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-145HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166862.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_015166863.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_015166864.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_015166865.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLM0ZH820.0M0ZH82_SOLTU; Uncharacterized protein
STRINGSolyc12g009050.1.11e-179(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-40nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]