PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400000262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARF | ||||||||
Protein Properties | Length: 686aa MW: 76550.4 Da PI: 6.4695 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74 | 1.8e-23 | 111 | 211 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF PGSC0003DMP400000262 111 FCKILTASDTSTHGGFSVLRKHANEClpqldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVF 197 99**************************999543..445568*********************************************** PP EE-SSSEE..EEEEE- CS B3 83 kldgrsefelvvkvfr 98 +++++el+v+v+r PGSC0003DMP400000262 198 L--RDDNGELRVGVRR 211 *..5589999****98 PP | |||||||
2 | Auxin_resp | 101.8 | 8.7e-34 | 237 | 316 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v ++k+++a+++ +svGmRf+m+fe+eds+err++Gt+vg+ d+++ +W++SkWrsLk PGSC0003DMP400000262 237 ASHAITTQTRFVVYYKPRT--SQFIVGLNKYLEAVSHGFSVGMRFRMRFEGEDSPERRFTGTIVGTGDISS-QWSESKWRSLK 316 789***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.26E-39 | 103 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-40 | 105 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.16E-20 | 109 | 211 | No hit | No description |
SMART | SM01019 | 2.3E-21 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-21 | 111 | 211 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.252 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-31 | 237 | 316 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.9E-6 | 562 | 606 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 6.38E-14 | 565 | 646 | No hit | No description |
PROSITE profile | PS51745 | 27.693 | 570 | 662 | IPR000270 | PB1 domain |
Pfam | PF02309 | 2.0E-7 | 616 | 660 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MGSEDLYRDL WKACAGPLVD VPRDAERVYY FPQGHIEQLE ASTNQAVNQQ IPQFNLSSKI 60 LCRVVHVQLL AETETDEVYA QITLHPEAEQ EEPSKPDPCP PDLPKRTVHS FCKILTASDT 120 STHGGFSVLR KHANECLPQL DMTQATPTQD LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW 180 STFVTSKRLV AGDAFVFLRD DNGELRVGVR RLARQQSPIP QSVISSQSMH LGVLATASHA 240 ITTQTRFVVY YKPRTSQFIV GLNKYLEAVS HGFSVGMRFR MRFEGEDSPE RRFTGTIVGT 300 GDISSQWSES KWRSLKIQWD EPASMVRPDR VSPWEIEPFV ASTCVDVAQP GIKSKRPRPL 360 DLPRTEIAVA SAASPFWCPG SGPTLEVSHL GGITDVQSHD NQLFWSSKQN SCLSNGVSNT 420 SCRTHLSGAW QHSMLANGSL NLLRDSIEDN KQLITRSALL DYGSPMSSKA SSGLLHDQVN 480 RGNKREISSG CRLFGIDLRN NSNNTSTKAK EILGPNITSN CADEAPIVHD ESEIDKDQNV 540 EHLNPSDEKK QVQLEALPKD TLKQGPTSSR TRTKVQMQGV RVGRAVDLTA LSGYDDLISE 600 LEKIFDIKGE LCPRNKWEVV YTDDEGDMML VGDDPWLEFC NMVRRIFIYS SEEVKKMTPR 660 CKLPILSLEG EGTMPSVDSE LKAEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-169 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
4ldw_A | 1e-169 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
4ldw_B | 1e-169 | 3 | 339 | 16 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 354 | 358 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400000262 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233120 | 0.0 | AC233120.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-101i8 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339723.1 | 0.0 | PREDICTED: auxin response factor 18 isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | M0ZGK3 | 0.0 | M0ZGK3_SOLTU; Auxin response factor | ||||
STRING | PGSC0003DMT400000345 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400000262 |
Publications ? help Back to Top | |||
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