PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400000207 | ||||||||
Common Name | LOC102598554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 34424.7 Da PI: 4.8931 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 93 | 144 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++++GVr+++ +g+W AeIrdp++ ++r++lg+f taeeAa+ + a+ +l+g+ PGSC0003DMP400000207 93 KKFRGVRQRP-WGKWSAEIRDPVK---KTRVWLGTFETAEEAARKYNIAAIQLRGA 144 59********.**********654...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.35E-32 | 93 | 150 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-21 | 94 | 151 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-11 | 94 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.7E-34 | 94 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-29 | 94 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.367 | 94 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 117 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
METKTSQKIK VHKTITTKYD QNRLTPRVVR ICYTDCDATD SSSDDDDDER NRVKKYVTEI 60 KFEKRVAAID VRKSLNSKKK KKVIDLKRDE NVKKFRGVRQ RPWGKWSAEI RDPVKKTRVW 120 LGTFETAEEA ARKYNIAAIQ LRGADAIINF IDTPLEKEKE NIITSVSDYD STGECENLCS 180 PTSVLRQNNN DNNNNNDDAA PAPAPDAKIT NQEMNDESKK MEIDQNGFMF DDNLPLMDQS 240 FLKDFFDFRS PSPLMDDVLL PGFSDGMGLL PEVLSIHGNR MLDEDLETCK WANDFFQDVC 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 93 | 150 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400000207 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339673.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6 | ||||
Swissprot | Q9SUE3 | 3e-39 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | M0ZGF4 | 0.0 | M0ZGF4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000274 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 9e-35 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400000207 |
Entrez Gene | 102598554 |
Publications ? help Back to Top | |||
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