PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000207
Common NameLOC102598554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 301aa    MW: 34424.7 Da    PI: 4.8931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000207genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-1993144156
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           ++++GVr+++ +g+W AeIrdp++   ++r++lg+f taeeAa+ +  a+ +l+g+
  PGSC0003DMP400000207  93 KKFRGVRQRP-WGKWSAEIRDPVK---KTRVWLGTFETAEEAARKYNIAAIQLRGA 144
                           59********.**********654...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.35E-3293150No hitNo description
SuperFamilySSF541717.85E-2194151IPR016177DNA-binding domain
PfamPF008471.3E-1194143IPR001471AP2/ERF domain
SMARTSM003809.7E-3494157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-2994152IPR001471AP2/ERF domain
PROSITE profilePS5103223.36794151IPR001471AP2/ERF domain
PRINTSPR003673.9E-1195106IPR001471AP2/ERF domain
PRINTSPR003673.9E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
METKTSQKIK VHKTITTKYD QNRLTPRVVR ICYTDCDATD SSSDDDDDER NRVKKYVTEI  60
KFEKRVAAID VRKSLNSKKK KKVIDLKRDE NVKKFRGVRQ RPWGKWSAEI RDPVKKTRVW  120
LGTFETAEEA ARKYNIAAIQ LRGADAIINF IDTPLEKEKE NIITSVSDYD STGECENLCS  180
PTSVLRQNNN DNNNNNDDAA PAPAPDAKIT NQEMNDESKK MEIDQNGFMF DDNLPLMDQS  240
FLKDFFDFRS PSPLMDDVLL PGFSDGMGLL PEVLSIHGNR MLDEDLETCK WANDFFQDVC  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2193150159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339673.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6
SwissprotQ9SUE33e-39CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM0ZGF40.0M0ZGF4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000002740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-35cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]