PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.6880s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 328aa    MW: 34710.5 Da    PI: 9.4179
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.6880s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.37.2e-3869128362
                  zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                             e alkcprCdstntkfCy+nny+ sqPr+fCk+CrryWt+GGalr vPvGgg+r+nkks+
  SapurV1A.6880s0010.1.p  69 EVALKCPRCDSTNTKFCYFNNYNFSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKSK 128
                             6689*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3452124IPR003851Zinc finger, Dof-type
PfamPF027015.7E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.34872126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVFSSAPFYL DPPNWQQQQP GQQPGASNET PQLPPLPPPA HVGGGGTAGS IRPGSMADRA  60
RLAKIPHPEV ALKCPRCDST NTKFCYFNNY NFSQPRHFCK TCRRYWTRGG ALRSVPVGGG  120
CRRNKKSKSQ SSSKSTVSSE REVGSTSSST SALPSEVSGH LPHQPSQLPF MSSLQNLAQF  180
GEGNIGLNFG GIQGQLGSTS GPSSGQADMG FPIGINSGMS GSALLSAGGV HQFPFFEFSP  240
SGLYPLQSEG AETPINVNGD SQLQSMTSSS RVSQLAPVKT EGNQGLNLSK APYSGTVVPQ  300
NNQYYWGGNT WTDLSGLNSS FTSHLFR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00281DAPTransfer from AT2G28810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.6880s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000263.10.0PREDICTED: dof zinc finger protein DOF2.2-like isoform X2
RefseqXP_024460176.10.0dof zinc finger protein DOF2.2 isoform X2
TrEMBLA0A2K2C2N40.0A0A2K2C2N4_POPTR; Uncharacterized protein
TrEMBLA0A3S9LK650.0A0A3S9LK65_POPTO; Dof-type zinc finger DNA-binding family protein
STRINGPOPTR_0001s24540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.15e-46Dof family protein