PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.6289s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 426aa    MW: 48133 Da    PI: 5.4271
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.6289s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.33.5e-091659339
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                            +r C+ + +k++++fC  ++ +lC+ C  + H+        H+v
  SapurV1A.6289s0010.1.p 16 ARACDSCLRKRARWFCVADDAFLCQACDASVHSAnqlasrhHRV 59
                            578*****************************667888885655 PP
2CCT705.8e-24368411144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  SapurV1A.6289s0010.1.p 368 REARVMRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 411
                             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6941461IPR000315B-box-type zinc finger
PfamPF006431.6E-71658IPR000315B-box-type zinc finger
CDDcd000216.23E-111761No hitNo description
PfamPF062032.2E-18368410IPR010402CCT domain
PROSITE profilePS5101716.112368410IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MIAGRKAENA MGGRTARACD SCLRKRARWF CVADDAFLCQ ACDASVHSAN QLASRHHRVR  60
LETASSSYRI SGSLDPDQHY SPPAWHQGFT RKARTPRHNS NKSLLVQQLL KDDREKVFNP  120
LPLVPEIGSE EEANRVADGS EDDQFLCRVP VFDPFAATLC DTVTAGEVYG QEGTCDLDSL  180
PGFLPSDIDL AEFAADVENM LGREADKEYH DTKDSGLLDC SKEEDEGQFC FSDKVVKIKD  240
EQEMEAVIDC HFDQDFNMAR ESLMDWNFDY EKLVDGDEEV EEKKLPVPET VMMNSTGYKE  300
MKRNVSLRLD YESVIIAWAN QGCPWTTGSR PELKPDDSWT DSMGACPKDG SNPYGGLGSH  360
TRGGDGEREA RVMRYKEKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR ASLMGTADFP  420
LKKQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378394RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.6289s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2130170.0AC213017.1 Populus trichocarpa clone POP051-F14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374368.20.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A2K1XIE40.0A0A2K1XIE4_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-85B-box type zinc finger protein with CCT domain