PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.6005s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 270aa MW: 29872.5 Da PI: 7.4176 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 23.4 | 1.9e-07 | 1 | 66 | 24 | 88 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 ++a c ++ + deLG+ + +t+ WL + p + ++t+ +++s+ + ++ s++++s + SapurV1A.6005s0010.1.p 1 MPAICSPAIYRIKDELGLASCEETVYWLVRHVRPDLIPVPETPIKTKSSKtRPIRETDSVDHDSVP 66 9*****************************************766664444777777777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56317 | 1.7E-33 | 95 | 269 | IPR003010 | Carbon-nitrogen hydrolase |
Gene3D | G3DSA:3.60.110.10 | 1.7E-34 | 96 | 269 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE profile | PS50263 | 23.591 | 97 | 270 | IPR003010 | Carbon-nitrogen hydrolase |
Pfam | PF00795 | 3.1E-32 | 98 | 268 | IPR003010 | Carbon-nitrogen hydrolase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MPAICSPAIY RIKDELGLAS CEETVYWLVR HVRPDLIPVP ETPIKTKSSK TRPIRETDSV 60 DHDSVPKPAC MANPDGDMPA YDFLLTAGGV PAARSPVRAT VVQASTVFFD TPATLDKAER 120 LIAGAAAYRS QLVVFPEAFI GGSPTYLKFD AINSTVIDGD LQKYYASTID VPGPEVHRLA 180 KLTGKYKVHI VMEVVERAGC YLYSTMMFFD SLGKCLGLHR KLIQRASEIS LWRSGEKSTL 240 PAYETSIEKI GSLICWDNRL PLLRAELYDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3wuy_A | 1e-19 | 97 | 267 | 16 | 184 | Nitrilase |
3wuy_B | 1e-19 | 97 | 267 | 16 | 184 | Nitrilase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification (By similarity). {ECO:0000250}. | |||||
UniProt | Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.6005s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU285280 | 3e-58 | GU285280.1 Populus balsamifera isolate KUU07 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285281 | 3e-58 | GU285281.1 Populus balsamifera isolate KUU07 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285282 | 3e-58 | GU285282.1 Populus balsamifera isolate MGR10 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285283 | 3e-58 | GU285283.1 Populus balsamifera isolate MGR10 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285284 | 3e-58 | GU285284.1 Populus balsamifera isolate NWL07 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285285 | 3e-58 | GU285285.1 Populus balsamifera isolate NWL07 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285286 | 3e-58 | GU285286.1 Populus balsamifera isolate POR11 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285287 | 3e-58 | GU285287.1 Populus balsamifera isolate POR11 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285288 | 3e-58 | GU285288.1 Populus balsamifera isolate RNA13 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285289 | 3e-58 | GU285289.1 Populus balsamifera isolate RNA13 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285290 | 3e-58 | GU285290.1 Populus balsamifera isolate STL13 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285291 | 3e-58 | GU285291.1 Populus balsamifera isolate STL13 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285292 | 3e-58 | GU285292.1 Populus balsamifera isolate STO11 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285293 | 3e-58 | GU285293.1 Populus balsamifera isolate STO11 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285294 | 3e-58 | GU285294.1 Populus balsamifera isolate WHR03 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285295 | 3e-58 | GU285295.1 Populus balsamifera isolate WHR03 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285296 | 3e-58 | GU285296.1 Populus balsamifera isolate LOV02 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285297 | 3e-58 | GU285297.1 Populus balsamifera isolate LOV02 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285298 | 3e-58 | GU285298.1 Populus balsamifera isolate GIL14 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285299 | 3e-58 | GU285299.1 Populus balsamifera isolate GIL14 haplotype B nitrilase 4 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322807.3 | 1e-166 | bifunctional nitrilase/nitrile hydratase NIT4B | ||||
Swissprot | Q42966 | 1e-64 | NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B | ||||
Swissprot | Q6H849 | 2e-64 | NRL4_ORYSJ; Bifunctional nitrilase/nitrile hydratase NIT4 | ||||
TrEMBL | A0A2K1XC70 | 1e-165 | A0A2K1XC70_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s07510.1 | 1e-119 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17896 | 3 | 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.6005s0010.1.p |
Publications ? help Back to Top | |||
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