PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.5299s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 342aa    MW: 37610.3 Da    PI: 4.4797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.5299s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.3e-164386955
                     AP2  9 dkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +k +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  SapurV1A.5299s0010.1.p 43 RKPSGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 86
                            6779*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.4643594IPR001471AP2/ERF domain
PfamPF008473.2E-104386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-234393IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-164395IPR016177DNA-binding domain
SMARTSM003806.7E-2843100IPR001471AP2/ERF domain
CDDcd000188.64E-264493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MARKRKVSGS AEDKSSGEGT MAWDEMVMEA DAAAALGGAR RARKPSGRWV AEIKDTIQKI  60
RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPSSPSS SASPALPSKI TNLLLQRITA  120
RNKSCDPSAT AQPHNQQQKL VEEYREPACY FSDTQFTGFL DHTDDHSMRN DNTNSTISSS  180
FDCTTTSIVP CLTDKEDSSG KEWDFDYSWS DVAESSSGDG NNLGGEGEGE EEGNDIGALN  240
FHFVDDVGSP FYYSPFEIAE EIEEPVEPEC YGDEPAMLKA AMKRMKYERK FSASLYAFNG  300
IPECLNLKLG SGNPKGNGRS DQLAKLRNAC NSKKDESRAE EE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.5299s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559580.0EF155958.1 Populus trichocarpa WIN1-like protein (WIN1L) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323878.30.0uncharacterized protein LOC7495994
TrEMBLA9PLA70.0A9PLA7_POPTR; WIN1-like protein
STRINGPOPTR_0017s12370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-16related to AP2 11