PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.4599s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 757aa    MW: 85032.8 Da    PI: 4.8955
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.4599s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.54.6e-1133837531373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL+ cA+avs +d + a++lL+++++++sp gd  qRla++f+++L+arl ++++++y al++ +ts    ++ l+a++++  +
  SapurV1A.4599s0010.1.p 383 LRTLLILCAQAVSVNDRRTANELLKQIRQHSSPLGDGSQRLAHCFANGLEARLDGTGTHIYTALSVDKTS---AVDMLKAYQAYISA 466
                             5789**************************************************************9999...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k++ + aN+ Il+ +e+++++HiiDf+i +G+QWp+++  L+sRp+gpp+lRiTg++ p+sg   +e+++etg rLak++e+ 
  SapurV1A.4599s0010.1.p 467 CPFKKMAIIFANHSILNVAEKASTLHIIDFGILYGFQWPSFIYRLSSRPGGPPKLRITGIELPQSGfrPAERVQETGCRLAKYCERY 553
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfe+n+ +a++++++++++L+++++E+laVn+ ++ ++llde+v ++s+r++vL+l+  ++P+++v++  + ++n++ F++rf e
  SapurV1A.4599s0010.1.p 554 NVPFEYNA-IAQKWDTIQIDDLKINRNEVLAVNCLFRFKNLLDETVVVNSPRNAVLNLISMTKPDIFVHSIVNGSYNAPFFVTRFRE 639
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++salfd+l++++pre++ r k E+e+ gre++nv+aceg+er+er et+++W+ r ++aG+k++pl+  +  + k+ ++  + 
  SapurV1A.4599s0010.1.p 640 ALFHFSALFDMLDTNMPREDKMRLKFEKEFYGREAMNVIACEGSERVERPETYKQWQVRNMRAGMKQLPLDPLVIRKLKCKVKVGYH 726
                             ***********************************************************************************9998 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                             + + v+e+++++++gWk+r + + SaW
  SapurV1A.4599s0010.1.p 727 EDFVVDEDDNWMLQGWKGRIVNASSAW 753
                             99************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.501357734IPR005202Transcription factor GRAS
PfamPF035141.6E-110383753IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MGSDSRFTEF SGPNKFEDEI VFPVSDQYQN VTNGFKFEDL EFDFVENPLV LPDPDPGNSA  60
LSSITSIDGD SPSDDNDSDN LLKYISQVLM EENMEEKPCM FHDPLALQAA ERSLYDVLGE  120
KNLPYSPHES PSYGDQFLVD SPDNSFWSSR DYSSNSSFIS NTASLVDPQW NGESGESKPS  180
FMQMPLSTDF VFQSAANPSL QSSFKFHNGL ASDSAIKPSV GNIVVPNIFS DSDFALQFKR  240
GVEEASKFLP KGNPLVIDLE NSSLTPEMNR NAPNVVVKAE KEDREYLPEW LAGKKNHERE  300
DGGFEEERSN KQCAVSIDEC ELSEMFDMLL GVGDGCQPPH CILNQGEQFE SGKALGQNGQ  360
TKGTNGSKTR AKRRGDNKEV VDLRTLLILC AQAVSVNDRR TANELLKQIR QHSSPLGDGS  420
QRLAHCFANG LEARLDGTGT HIYTALSVDK TSAVDMLKAY QAYISACPFK KMAIIFANHS  480
ILNVAEKAST LHIIDFGILY GFQWPSFIYR LSSRPGGPPK LRITGIELPQ SGFRPAERVQ  540
ETGCRLAKYC ERYNVPFEYN AIAQKWDTIQ IDDLKINRNE VLAVNCLFRF KNLLDETVVV  600
NSPRNAVLNL ISMTKPDIFV HSIVNGSYNA PFFVTRFREA LFHFSALFDM LDTNMPREDK  660
MRLKFEKEFY GREAMNVIAC EGSERVERPE TYKQWQVRNM RAGMKQLPLD PLVIRKLKCK  720
VKVGYHEDFV VDEDDNWMLQ GWKGRIVNAS SAWIPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-493667551379Protein SCARECROW
5b3h_D1e-493667551379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.4599s0010.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464547.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K1Z2340.0A0A2K1Z234_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]