PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.4584s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 323aa    MW: 37069.5 Da    PI: 7.4997
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.4584s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.32.7e-89632058374
                    GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRi 144
                             sely+ l++++ +    ++ l+a + f  +sP++ +s++   q+Il+  e++ r+Hii f+i +G+ Wp+L+q L++Rp+gpp lR+
  SapurV1A.4584s0010.1.p   6 SELYANLAANRVT---AERILKASRRFISASPFIVMSNFFSTQTILDLSENAARLHIIHFGILYGFPWPSLIQHLSERPGGPPVLRV 89 
                             5566555555554...7888999999************************************************************* PP

                    GRAS 145 Tgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                             Tg++ p++g  s+e++ee+g  L++++e+++vpfe+n+ +++++e+++le+L+++++E+++V++ ++  rllde+v l+ +rd+v++
  SapurV1A.4584s0010.1.p  90 TGIEFPQTGcrSAETIEEIGPYLESYCEKFNVPFEYNA-ISQKWENVQLEDLKINRDEVTVVSSLYRFRRLLDETVVLNGHRDAVIS 175
                             ********9*9***************************.7*********************************************** PP

                    GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                             l+k+++P v+++   +  +ns+ F+ rf eal y+s+lfd+lea+ +re+ er + E+e++g+ei nv+aceg +r+er e++++W+
  SapurV1A.4584s0010.1.p 176 LIKRINPAVFIHGIVNGAYNSPFFVSRFREALFYFSSLFDMLEANTAREDPERLVFEQEVFGKEILNVIACEGCDRIERPEKYKQWQ 262
                             *************************************************************************************** PP

                    GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +r  +aG++++pl+e ++++++  ++  + + + ++++ +++++gW++r L+++S+W+
  SapurV1A.4584s0010.1.p 263 ARNVRAGLRQLPLKEGIMEKVREQVKSSYHKDFLMDQDGQWMLQGWRGRILFAISCWK 320
                             *****************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.3091300IPR005202Transcription factor GRAS
PfamPF035149.2E-876320IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAGTGSELYA NLAANRVTAE RILKASRRFI SASPFIVMSN FFSTQTILDL SENAARLHII  60
HFGILYGFPW PSLIQHLSER PGGPPVLRVT GIEFPQTGCR SAETIEEIGP YLESYCEKFN  120
VPFEYNAISQ KWENVQLEDL KINRDEVTVV SSLYRFRRLL DETVVLNGHR DAVISLIKRI  180
NPAVFIHGIV NGAYNSPFFV SRFREALFYF SSLFDMLEAN TAREDPERLV FEQEVFGKEI  240
LNVIACEGCD RIERPEKYKQ WQARNVRAGL RQLPLKEGIM EKVREQVKSS YHKDFLMDQD  300
GQWMLQGWRG RILFAISCWK SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-342131994378Protein SCARECROW
5b3h_A2e-342131993377Protein SCARECROW
5b3h_D2e-342131993377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.4584s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314170.10.0scarecrow-like protein 14
SwissprotQ9XE581e-129SCL14_ARATH; Scarecrow-like protein 14
TrEMBLB9HPF60.0B9HPF6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-131SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]