PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.4442s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 369aa MW: 41101.8 Da PI: 7.4753 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.9 | 2.2e-31 | 48 | 178 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 g+kdrhsk++T +g+RdRRvRls+ +a++++dLqd+LG+ ++sk ++WLl++ak+ i+el+ ++ + +++ +++ +s++ + SapurV1A.4442s0010.1.p 48 FGGKDRHSKVCTIRGLRDRRVRLSVATAIQLYDLQDRLGLNQPSKVVDWLLNEAKQDIDELPPLPVMPGNFSLNHQAMLGSSHELGA 134 689*************************************************************77777666444433333322222 PP TCP 89 ...........................................k 89 + SapurV1A.4442s0010.1.p 135 sqsgkevfkmnssinwedpnvfprpnswnsdafwrakskevvmD 178 22222343333333344444444444444444444333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.2E-30 | 50 | 192 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.897 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MITSSKEVDC PPKKEDDTKD GKISKASSSS APWLRLKDPR IVRVSRAFGG KDRHSKVCTI 60 RGLRDRRVRL SVATAIQLYD LQDRLGLNQP SKVVDWLLNE AKQDIDELPP LPVMPGNFSL 120 NHQAMLGSSH ELGASQSGKE VFKMNSSINW EDPNVFPRPN SWNSDAFWRA KSKEVVMDQL 180 NEKEYWKKRN EEDTQDSNIE GNSTAQVSSS NFFHRASHSS LPSLMNNGMP YGSFFHLEPP 240 NFPLSHMGNH GFSTHTGDIH NLNAVPLSSA LSLSSGSQFF VCQPGTTQSY FPSHVTASME 300 NDPRQINHFQ VMTPSTQNLF PNSLTPSPYH TSQSMKPSQY FSATPSLLRS DQNSESPPDH 360 KVDPGFPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.4442s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444582.1 | 0.0 | transcription factor TCP13 | ||||
Refseq | XP_024444583.1 | 0.0 | transcription factor TCP13 | ||||
TrEMBL | B9IK87 | 0.0 | B9IK87_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s13050.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-49 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.4442s0010.1.p |