PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.4333s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25361.4 Da PI: 7.346 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.5e-10 | 159 | 206 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++iN+++ L++l+P + +k + a +Le+ ++Y++sLq SapurV1A.4333s0010.1.p 159 SHSIAERVRREKINNKLRCLQDLVPGC----HKSMGMAVMLEEIINYVHSLQ 206 8*************************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-17 | 153 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.31E-10 | 153 | 210 | No hit | No description |
PROSITE profile | PS50888 | 15.243 | 155 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-17 | 155 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-7 | 159 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-9 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MPEFAEYQQR FRPSQPLTEM MNVNMEILKH LSDLNPSILE NFSTAEFSAD SLLAHQQPEF 60 TTYNHNNLSS TFHPDILSTT TAVHTVTLNQ NGTHETKKRK SKEQSTRSYK NISPTGSSNE 120 TKKKNNLGGG KKGENRDKEV DQTEEVIHVR AKRGQATDSH SIAERVRREK INNKLRCLQD 180 LVPGCHKSMG MAVMLEEIIN YVHSLQNQVE FLSMELATAS CSVE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.4333s0010.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383447.1 | 1e-137 | transcription factor bHLH75 | ||||
TrEMBL | U5GG63 | 1e-136 | U5GG63_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s15590.1 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14412 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 1e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.4333s0010.1.p |