PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.4181s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 197aa MW: 22936.2 Da PI: 6.0229 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.5 | 3.9e-15 | 82 | 133 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L +++++ + SapurV1A.4181s0010.1.p 82 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVEKVNHVAECH 133 689******************************************9988755 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.0E-15 | 78 | 142 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.599 | 80 | 150 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.8E-13 | 82 | 155 | No hit | No description |
Pfam | PF00170 | 5.1E-13 | 82 | 131 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.48E-13 | 82 | 131 | No hit | No description |
CDD | cd14702 | 2.63E-18 | 83 | 134 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 85 | 100 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MQPNEIARLH YPVHPNSSPY SAHFSMTQNN SQMFEFNHFT NQSYNFQFPP QVQEFSLQAS 60 SMSSHSTSDE ADEQQLSLIN ERKQRRMISN RESARRSRMR KQKHLDELWS QVVWLRNENH 120 QLVEKVNHVA ECHDQVAQEN NQLKEEISDL RQMLTDMQLN SPYPSLKDLE NITCDTAYFR 180 AESSNQSITS SSDLLG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 94 | 101 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.4181s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC210139 | 0.0 | AC210139.1 Populus trichocarpa clone POP113-I04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012258.1 | 1e-125 | PREDICTED: basic leucine zipper 43-like | ||||
Swissprot | Q9FMC2 | 3e-41 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | B9NC16 | 1e-120 | B9NC16_POPTR; BZIP family protein | ||||
STRING | POPTR_0004s10990.1 | 1e-121 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1604 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30530.1 | 6e-49 | basic leucine-zipper 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.4181s0010.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|