PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.4156s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 276aa MW: 30555.4 Da PI: 10.4714 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98 | 6.8e-31 | 203 | 257 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt +LH+rFve v++LGG++kAtPk il+ m+v+gLt+ hvkSHLQkYR SapurV1A.4156s0010.1.p 203 KRRVRWTRDLHKRFVESVNRLGGAQKATPKGILKEMDVHGLTIFHVKSHLQKYRA 257 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.636 | 200 | 260 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 201 | 258 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-16 | 202 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.9E-24 | 203 | 257 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-7 | 205 | 256 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MASSWNVGFR FLSNLQEGSI PKFNPGTSDQ QIPSEPIISG HFASSAPAPY APEGCKGLSY 60 DHTSSLSVCS PVGKTPYSAA NPQNYILGLK SSLNLINSQN NQDPKSPGNT RQDLCRNLQR 120 KGLLPPILKR PASKLAVLNR RQIHVDNSFK DHQNHAVACH SFSSQFTKPN SSFQQQKQPE 180 NSPDDKISGT NNPVSSGATI ESKRRVRWTR DLHKRFVESV NRLGGAQKAT PKGILKEMDV 240 HGLTIFHVKS HLQKYRAERY LSESKEGIFP WKLLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-22 | 203 | 260 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-22 | 203 | 260 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-22 | 203 | 260 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-22 | 203 | 260 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-22 | 203 | 260 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-22 | 203 | 260 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-22 | 203 | 260 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-22 | 203 | 260 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-22 | 203 | 260 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-22 | 203 | 260 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-22 | 203 | 260 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-22 | 203 | 260 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.4156s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369451.2 | 1e-118 | myb family transcription factor PHL5 isoform X3 | ||||
Refseq | XP_024448738.1 | 1e-117 | myb family transcription factor PHL5 isoform X1 | ||||
Refseq | XP_024448741.1 | 1e-118 | myb family transcription factor PHL5 isoform X2 | ||||
TrEMBL | A0A3N7EBF7 | 1e-117 | A0A3N7EBF7_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7EDN9 | 1e-116 | A0A3N7EDN9_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7FU15 | 1e-116 | A0A3N7FU15_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s23560.1 | 1e-121 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17875 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 5e-30 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.4156s0010.1.p |