PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3995s0020.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 643aa    MW: 71140.6 Da    PI: 9.7568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3995s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-091547336
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                            +W t+E++ll+ avk++G ++W+++a ++  ++t
  SapurV1A.3995s0020.2.p 15 SWGTWEELLLASAVKRHGFKNWDSVALELR-TKT 47
                            7***************************99.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.6E-41269IPR001005SANT/Myb domain
CDDcd001671.33E-51548No hitNo description
PfamPF002493.4E-81547IPR001005SANT/Myb domain
SMARTSM002979.0E-16280385IPR001487Bromodomain
SuperFamilySSF473703.14E-16287388IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.5E-14290397IPR001487Bromodomain
PROSITE profilePS5001411.657295366IPR001487Bromodomain
PfamPF004392.9E-10296366IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MASQDEEIHP ENQPSWGTWE ELLLASAVKR HGFKNWDSVA LELRTKTCLP HLLTTAQICQ  60
QKYLDLNRRF NTNNLHHSHT PEEDYPDEEQ NNVDTDIIDN NFVNVPWFEE LRKLRVAELK  120
QEVQRYDVSI LTLRLKVKKL EEERERSFQG DSNTEKPDLK PDRLENEEDK PGTVSGEESD  180
RENRSVNESN STASGGGEDA VPKLEEAEPV QGGSGGPDPV VSGSSRKALE EGAGGGGEEE  240
SCELGDSVTQ RSSESLSSGR KRKGSEGKEE VSVTGGEETV AVSSEPFIGL LEVIGAHKNA  300
SLFESLLQSQ EMSAYKDMIR QHMDLEAIQT KLEQGSYSPS ILLFFRDLLL LFNNALVFFP  360
KHSVESLIAH KIRSLVMNEM RKNTKRSDST PVPENIPSQP KRELERSDSL LAKHKSSIPS  420
IVCRKRSSIS AKPSSSSLGQ KIEQQQQQIN ENKPVNDLKP PVNDLKPPTA EQGLLKMKSE  480
EKPVTGARST RRGKNLAKVS TSLSKKQNTS PDTKAAAPEK SETSKPEKKK NEALPMEKKK  540
SAVDFLKRIK NNSPAETPKN TGRGASNGGE RKMEGSGGKG KERVLKKSSD KKQGKQESSP  600
SKKNVGRPSK KAAEVSSRVS GKRGRESGGK EVAKRPRKRS RR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1633641KRPRKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3995s0020.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002321.10.0PREDICTED: muscle M-line assembly protein unc-89-like isoform X2
TrEMBLU5GV420.0U5GV42_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23640.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-41DNA-binding bromodomain-containing protein