PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3958s0030.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 268aa MW: 30589.2 Da PI: 8.7532 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 107 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k+F +L +H + H SapurV1A.3958s0030.3.p 107 WRCGYCKKTFYEEKYLDKHFDNrH 130 58*****************77666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 109 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGLTRKHFTV VFLCLCFTVF LLLISVSSSS SPQGQMETAA SRSLEHDNGV HCSRERSRAA 60 WKIIDEYLMP FVEKERYKIS SRCRLHPEND LYRDQEQHKM HVDINEWRCG YCKKTFYEEK 120 YLDKHFDNRH YDLLNVSHSR CLADLCGALH CDLVLDSAPH KTRCNPAAIG RNKHLCESLA 180 DSCFPVSEGP SALHLNEFFL RQFCDAHTCS GGRKPFSKGG KRETSTLHVV ISVLVLMLLA 240 LFYIFMGIKR SSQGLKHISK SGQKKRS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3958s0030.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045209.1 | 0.0 | PREDICTED: uncharacterized protein LOC105140180 isoform X1 | ||||
Refseq | XP_011045210.1 | 0.0 | PREDICTED: uncharacterized protein LOC105140180 isoform X1 | ||||
Refseq | XP_011045211.1 | 0.0 | PREDICTED: uncharacterized protein LOC105140180 isoform X1 | ||||
Refseq | XP_011045212.1 | 0.0 | PREDICTED: uncharacterized protein LOC105140180 isoform X1 | ||||
Refseq | XP_011045213.1 | 0.0 | PREDICTED: uncharacterized protein LOC105140180 isoform X1 | ||||
TrEMBL | A0A2K2C7R7 | 0.0 | A0A2K2C7R7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s36240.1 | 1e-179 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 1e-101 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3958s0030.3.p |