PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3824s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 550aa    MW: 61631.3 Da    PI: 9.6518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3824s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09445492448
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             WTt E  +l+d+++q+G+g+W+ I + m      Rt+ +++++w+++l
  SapurV1A.3824s0010.1.p 445 WTTPEVMKLIDGIAQYGTGRWTDIKKLMFsstAYRTPIDLRDKWRNLL 492
                             ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-13434495IPR009057Homeodomain-like
PROSITE profilePS5129412.882437496IPR017930Myb domain
SMARTSM007171.9E-8441494IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-16443517IPR009057Homeodomain-like
CDDcd116602.64E-16443493No hitNo description
PfamPF002493.3E-7445492IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MPRMDKLDRE THFPKKFASM KCQRVKVDDS FAPALEDEAV EVQHLLAEPK TDHVSVDGVL  60
CLGKEKSSKC SETNGFSFGF NDGMRRNIGG LHSHITQGPD DLDLGVLDGF LDEVDEVDDI  120
HAANDFSGAY EDFILDIELA QKVSYLDYTP RDGSRLRNSS SESQSPGCSG SSNGAAGMSE  180
LSTATIPESE SKNGWHNKTV KCKLRRSSGD KWNSQEPGED SVCPTSDDIE GLDELDDDAK  240
PLISLVSGKN AKKVVQAAKA GTSARQKRLR KPTKRYIEEL SDPKSKQVME RKSDLSATLK  300
DKRPKIRSHD ELHCGGALAR TPKESFSENF NQAISKGTDE PLHLRSKPVS ERRTNPSFIS  360
KGRCWSVTSQ NEPCQVRAVK FAPKELSLTG PSAQAPFESR PRRGRPKKSL PLSFLESEDD  420
ESEDDCVKKR ISKKSNDRRK HQRMWTTPEV MKLIDGIAQY GTGRWTDIKK LMFSSTAYRT  480
PIDLRDKWRN LLRASGAQKR KSNKKEDKEK LKDVVRSLPS SVFRRVRELA SLHPYPRFSP  540
GGRYIRRKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3824s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2312200.0CU231220.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381433.10.0uncharacterized protein LOC18100175
RefseqXP_006381434.10.0uncharacterized protein LOC18100175
RefseqXP_006381436.20.0uncharacterized protein LOC18100175
RefseqXP_024459622.10.0uncharacterized protein LOC18100175
TrEMBLU5GCT10.0U5GCT1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12820.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-22TRF-like 6