PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3742s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 486aa    MW: 54102 Da    PI: 8.9591
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3742s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.64.9e-32297350255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  SapurV1A.3742s0010.1.p 297 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 350
                             9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-15294350IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28295350IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23297350IPR006447Myb domain, plants
PfamPF002499.2E-7298349IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MPLEGVFIEP SSNPVPDLSL HICPPNISSP PSLCSKNNYI SNKVEESFSL LGRQDATRKP  60
DTASSMRSSD SRAYIELSLA HPTADLDEES RRIRRNLSSS RAGELPQLNP YRQQSHNLHQ  120
QQYLHHSNST THHLNRIDHG VSLLEVSDGL RPIKGIPVYH NRSFPFTPLE HSSRERKDPK  180
MCYHQMPYPS SSFCSPSVNH HSSSSTSSPY SIGGAGLDHM SMLNSSGPNQ ALPGPYNRLA  240
PTTRFNGLST DAFKSHPWQH HHHHNQYGVG STEGSPHGLI RSRFLPKFPT KRSMRAPRMR  300
WTSTLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTDKPASS  360
SDGSGEEDRS PIGSSYSNAN ERGGLQRGVQ SDGSTVQPDI DYPLTSTTTR WSNSSSGREA  420
WLQKNSNDMD GHRQGTFQSR QRSGQLMEEC DSTRLKSYLG SGLDCKNPSL EFTLGRPDWQ  480
GKEHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-16298352357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16298352357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16298352357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16298352357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3742s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444406.10.0transcription repressor KAN1-like
TrEMBLA0A2K1X7N10.0A0A2K1X7N1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s02220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17563391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-71G2-like family protein