PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3708s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 362aa    MW: 39831.1 Da    PI: 6.6903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3708s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.6e-07137158223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              C +Cgk F+r  nL+ H+r H
  SapurV1A.3708s0010.1.p 137 FCDICGKGFKRDANLRMHMRAH 158
                             6*******************99 PP
2zf-C2H211.90.00071257273521
                             TTTEEESSHHHHHHHHH CS
                 zf-C2H2   5 dCgksFsrksnLkrHir 21 
                              Cg+sFsrk+ L  H+ 
  SapurV1A.3708s0010.1.p 257 SCGTSFSRKDKLFGHMA 273
                             5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.16E-6133159No hitNo description
SMARTSM003550.0017136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905136163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-6136158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0047137156No hitNo description
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SMARTSM0035541188221IPR015880Zinc finger, C2H2-like
SMARTSM0035517226248IPR015880Zinc finger, C2H2-like
SMARTSM00355210254278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSNPGESTRT PTGFSVPASN TDPRVPLRNL SSVRTRMDSL QQFLSESVNF NTLIRKDQMD  60
MISSEISSAI HEIIINAAAL LSCSSSSSQP LTPLPPVEST AMKKAQVLKV ENKEENEKDS  120
ELVELDAVEL LAEHVHFCDI CGKGFKRDAN LRMHMRAHGN QFKTLEALAK PDKGNETISA  180
SLAGKTKFSC PFEGCNRNKK HSKFKPLKSV ICVRNHFKRS HCPKMFSCNR CNKKSFSVVT  240
DLKSHLKHCG ESRWKCSCGT SFSRKDKLFG HMALFEGHMP AVVVEEEESK AKEVGVGGAL  300
AMEEDEEEEL GVKGDNLGGD SNDNEVFEGL LDGFGSMEGY SLQDVLGSPF SGIEEFCGFR  360
H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3708s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310559.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLB9HFF70.0B9HFF7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.35e-70C2H2 family protein