PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3703s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 363aa    MW: 41662.8 Da    PI: 4.7032
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3703s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36441352102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y+i+ed++++++isws+ +nsfvv+d++ f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +
  SapurV1A.3703s0010.1.p  44 FLTKTYDIIEDSSTNHIISWSRGNNSFVVWDPQAFSISLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLR 121
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k+ll++i+r++ 
  SapurV1A.3703s0010.1.p 122 GQKHLLKTIRRRRA 135
                             ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.07E-3640133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-6140133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.3E-3940133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDLWDRAIKE EYTGGSSSTY SSGMAYTASP QPMEGLHDPG PPPFLTKTYD IIEDSSTNHI  60
ISWSRGNNSF VVWDPQAFSI SLLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
RGQKHLLKTI RRRRAPQQAL EACVEVGTFR LDEEVDRLSR DKQVLMVELV KLKQQQQTSK  180
ACLQLMEQRI KRNENKQQHM MSFLARAMQN PTFVKQLVHQ KDMMKELEEE ISSKKKRRAS  240
YPGRGNVEVG EFGHGTEGVT AFVKIEPREF GDFSEFEVPE FLDLAMNMQE LSESQLINLD  300
EECIEKGEED ENKGKNFDEA FWEDLLNEDI DEQIAILGGE GGCEEDVNVL VEQLGYMGCS  360
PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-234213327129Heat shock factor protein 1
5d5v_B1e-234213327129Heat shock factor protein 1
5d5v_D1e-234213327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120133RGQKHLLKTIRRRR
2233237KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.3703s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139850.0KP013985.1 Populus simonii heat shock transcription factor A6b1 (HsfA6b1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465624.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-124HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9HUR10.0B9HUR1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s09210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-116heat shock transcription factor A6B