PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3612s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 333aa MW: 36881.6 Da PI: 8.3711 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.7 | 5.6e-25 | 73 | 116 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e SapurV1A.3612s0010.1.p 73 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 116 79***************************************986 PP | |||||||
2 | QLQ | 59.8 | 7.6e-21 | 12 | 46 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+++L++Q+l+yKy+++++PvPpeLl ++ SapurV1A.3612s0010.1.p 12 PFTATQWHELEHQALIYKYMVSGVPVPPELLYSVK 46 8*****************************97775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.5E-13 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-15 | 12 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.654 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.064 | 73 | 117 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-21 | 74 | 116 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MLSAASARDG FPFTATQWHE LEHQALIYKY MVSGVPVPPE LLYSVKRSLE SSLASRLFPH 60 QPTGWGCFGR KADPEPGRCR RTDGKKWRCS KEAYPDSKYC ERHMHRGRNR SRKPVELAST 120 ATTAAAAPAI PLASMNRNLY NSTVSPSSSS FSHLSSSLES EMYAHQNSTR STFLYPHSSS 180 SGPHAGSGFS PQNSTTHNLF LDCGSSPRVD KEYRYSHGIR EDVDERAFFS DALGSARGVQ 240 DSYNQSSFKG YSQAQFQSFA ANTSKQEQQQ PGHHCFSLGT DIIKSSAAGS IKLEKEPETQ 300 KPLHHFFGEW KPKDADSWLD LASSSRTHEA DD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3612s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217588 | 1e-145 | AC217588.1 Populus trichocarpa clone POP047-P10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303244.3 | 0.0 | growth-regulating factor 5 isoform X1 | ||||
Swissprot | Q8L8A6 | 3e-62 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | A0A2K2B2J2 | 0.0 | A0A2K2B2J2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s06360.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9744 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-61 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3612s0010.1.p |