PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3547s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 697aa MW: 79369.7 Da PI: 7.045 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.4e-18 | 26 | 82 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR +++qle+Le+ + + yps+ r+eL+ +lgL++rq ++WF+ rR k++k SapurV1A.3547s0010.1.p 26 KSKRKMKSASQLEILEKIYSVDTYPSEVVRAELSVQLGLSDRQLQMWFCHRRLKDRK 82 6799***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-17 | 13 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.07E-15 | 20 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.244 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-15 | 25 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.75E-13 | 26 | 82 | No hit | No description |
Pfam | PF00046 | 1.7E-15 | 26 | 82 | IPR001356 | Homeobox domain |
SMART | SM00571 | 1.0E-21 | 556 | 615 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 17.101 | 556 | 615 | IPR018501 | DDT domain |
Pfam | PF02791 | 6.6E-18 | 557 | 612 | IPR018501 | DDT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MEEAAADGGG VEVEAKNKTP GEGESKSKRK MKSASQLEIL EKIYSVDTYP SEVVRAELSV 60 QLGLSDRQLQ MWFCHRRLKD RKAPSVKRPC KESPSLAGMP SGGETGVVAE VGNEHGSGSS 120 PFVLGVDPRR AVGRPTGVAV PRISADVQTM NRYYEPQQSI AELRAIAFVE AQLGEPLRED 180 GPILGMEFDP LPPDAFGAPI GSATTGQQKQ PVRVFEANLY ERPDVKPIKS TTRTLHEYQF 240 LPQQPTVRAE AYERAAPSCQ YGSPADGHNV KTGSISATLP FMHANEQVSS EYGLSNQVPS 300 LSLMPQESRQ GHRFPSTTEY ETVLQKCSFT NIGMDVQSGA HLVTALDNPC MSSDRRITHD 360 EDALRMERKR KSEEARIARE VEAHEKRIRK ELEKQDILRR RREEQMRKEM EKHDRERRKE 420 EERLLREKQR EVERYQREQR RELERREKYL QKESIRVEKM RQKEELRREK EAARQKAATE 480 RARARRMAKE SLELIDDERL ELMEVAASSK GLPSIIPLDF ETLQNLDLFR DKLTEFPPKS 540 VLLKRPFLIQ PWNDSEENVG NLLMVWRFLI TFADILGIWP FTLDEFVQAF HDYDPRLLSE 600 IHVSLLKSII KDIEDVARTP STGLGQNQNG AANPGGGHPQ IVEGAYAWGF DLRSWQRHLN 660 PLTWPEILRQ FGLSAGFGPQ LKKRNVDQAY LRDDNE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3547s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047700.1 | 0.0 | PREDICTED: uncharacterized protein LOC105141971 isoform X3 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A2K1ZTZ3 | 0.0 | A0A2K1ZTZ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.2 | 1e-88 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3547s0010.1.p |