PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.3542s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 25888 Da PI: 9.4322 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.3 | 4.3e-16 | 19 | 98 | 2 | 87 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 fkv +d+l++g l+lp kf++++g++ + l +g+ We++l +k++g+++l+kGWkeF++ + g f+vF+++g+ SapurV1A.3542s0010.1.p 19 FKVI-LEDSLREGKLMLPQKFVTRYGMDL---TNLAHLKVHGEAWEIEL--TKCDGKVWLQKGWKEFAEHYSVACGHFLVFEYEGN 98 5554.589999999***********9883...35777788*********..********************************987 PP | |||||||
2 | B3 | 61.1 | 1.8e-19 | 133 | 217 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ff v ++s++l+++ +++p +f+e++ + + + ++ + + rsW+vkli r +++ vl++GW +F+++n Lk+gD++ F+++++ SapurV1A.3542s0010.1.p 133 FFEVVIRSSYLARSFVCVPMSFVERYFKHIN---QFVMLQVEDRSWSVKLITRSSQRVAVLSAGWARFARENSLKVGDVCAFEMINN 216 889999********************54433...477778888*******76666666*************************8875 PP S CS B3 88 s 88 SapurV1A.3542s0010.1.p 217 G 217 4 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-20 | 13 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 14 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.00E-13 | 16 | 97 | No hit | No description |
PROSITE profile | PS50863 | 10.546 | 17 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-10 | 18 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-13 | 18 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-23 | 129 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.94E-21 | 130 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.65E-18 | 133 | 225 | No hit | No description |
SMART | SM01019 | 2.7E-16 | 133 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-17 | 133 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.69 | 133 | 227 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MGEGDAKPSV LVAKPPHFFK VILEDSLREG KLMLPQKFVT RYGMDLTNLA HLKVHGEAWE 60 IELTKCDGKV WLQKGWKEFA EHYSVACGHF LVFEYEGNLP GQFGKPELIN SSSSVLLTRG 120 SETESKFIST RPFFEVVIRS SYLARSFVCV PMSFVERYFK HINQFVMLQV EDRSWSVKLI 180 TRSSQRVAVL SAGWARFARE NSLKVGDVCA FEMINNGVLK AIISRSGR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-14 | 119 | 216 | 34 | 130 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-14 | 119 | 216 | 34 | 130 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.3542s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011028430.1 | 2e-57 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X4 | ||||
TrEMBL | A0A3N7F2D5 | 5e-55 | A0A3N7F2D5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s23920.1 | 1e-55 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-19 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.3542s0010.1.p |