PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3520s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 378aa MW: 40548.4 Da PI: 7.0517 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 24.1 | 1.1e-07 | 32 | 74 | 20 | 62 |
TCP 20 RRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikel 62 R++++a c ++ + deLG+ + +ti WL + k + SapurV1A.3520s0020.1.p 32 VRICMPAICSPAIYRIKDELGLASCEETIYWLVRHTKSSKTRP 74 59********************************999876654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56317 | 1.44E-36 | 116 | 343 | IPR003010 | Carbon-nitrogen hydrolase |
Gene3D | G3DSA:3.60.110.10 | 6.9E-31 | 117 | 271 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE profile | PS50263 | 22.246 | 118 | 377 | IPR003010 | Carbon-nitrogen hydrolase |
Pfam | PF00795 | 6.2E-31 | 119 | 284 | IPR003010 | Carbon-nitrogen hydrolase |
Gene3D | G3DSA:3.60.110.10 | 4.5E-7 | 272 | 342 | IPR003010 | Carbon-nitrogen hydrolase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MEEEFAKKAE VKQVKKRGPR PLIVAQSQAK NVRICMPAIC SPAIYRIKDE LGLASCEETI 60 YWLVRHTKSS KTRPIRETDS VDHDSVSKPA CMANPDGDMP AYDFLPTAGG VPTARSPVRA 120 TVVQASTMFF DTPATLDKAE RLIAGAAAYG SQLVVFPEAF IGGSPTYLKF DATNSTVTDG 180 DLQKYYASAI DVPGPEVDRL AKLAGKYKVH IVMGVVERAG CYLYSTMMFF DSLGKCLGLH 240 RKLIQTASES SLWRSGEKST MPAYETSIGK IVAANQFCKR RDYPLPPGDV NGDASLDDIT 300 CAGGSVIISP SGTILAGPDY QGECFISADL DLGHIVLAKT QFGGIESVVD KNHVGAAANG 360 SEPNLFASEM KTKALQK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3wuy_A | 1e-16 | 118 | 273 | 16 | 169 | Nitrilase |
3wuy_B | 1e-16 | 118 | 273 | 16 | 169 | Nitrilase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3520s0020.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU285280 | 3e-77 | GU285280.1 Populus balsamifera isolate KUU07 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285281 | 3e-77 | GU285281.1 Populus balsamifera isolate KUU07 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285282 | 3e-77 | GU285282.1 Populus balsamifera isolate MGR10 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285283 | 3e-77 | GU285283.1 Populus balsamifera isolate MGR10 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285284 | 3e-77 | GU285284.1 Populus balsamifera isolate NWL07 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285285 | 3e-77 | GU285285.1 Populus balsamifera isolate NWL07 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285286 | 3e-77 | GU285286.1 Populus balsamifera isolate POR11 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285287 | 3e-77 | GU285287.1 Populus balsamifera isolate POR11 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285288 | 3e-77 | GU285288.1 Populus balsamifera isolate RNA13 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285289 | 3e-77 | GU285289.1 Populus balsamifera isolate RNA13 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285290 | 3e-77 | GU285290.1 Populus balsamifera isolate STL13 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285291 | 3e-77 | GU285291.1 Populus balsamifera isolate STL13 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285292 | 3e-77 | GU285292.1 Populus balsamifera isolate STO11 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285293 | 3e-77 | GU285293.1 Populus balsamifera isolate STO11 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285294 | 3e-77 | GU285294.1 Populus balsamifera isolate WHR03 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285295 | 3e-77 | GU285295.1 Populus balsamifera isolate WHR03 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285296 | 3e-77 | GU285296.1 Populus balsamifera isolate LOV02 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285297 | 3e-77 | GU285297.1 Populus balsamifera isolate LOV02 haplotype B nitrilase 4 gene, partial sequence. | |||
GenBank | GU285298 | 3e-77 | GU285298.1 Populus balsamifera isolate GIL14 haplotype A nitrilase 4 gene, partial sequence. | |||
GenBank | GU285299 | 3e-77 | GU285299.1 Populus balsamifera isolate GIL14 haplotype B nitrilase 4 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322807.3 | 0.0 | bifunctional nitrilase/nitrile hydratase NIT4B | ||||
Swissprot | Q42966 | 2e-83 | NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B | ||||
TrEMBL | A0A2K1XC70 | 0.0 | A0A2K1XC70_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s07510.1 | 1e-177 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17896 | 3 | 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3520s0020.1.p |
Publications ? help Back to Top | |||
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