PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.3361s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 191aa MW: 21427.8 Da PI: 10.1462 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.4 | 6.5e-33 | 67 | 120 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ SapurV1A.3361s0010.1.p 67 PRLRWTPHLHHCFVHAVESLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 120 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.944 | 63 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-31 | 63 | 122 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.4E-15 | 64 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-24 | 67 | 121 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-6 | 68 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MRKLEIESSV NKGPASSSPD HTGDDHAMKS SPDDIIRVTE RGVVGVSSRE INLKSATVRP 60 YVRSKTPRLR WTPHLHHCFV HAVESLGGED RATPKMVLQI MDVKGLTISH VKSHLQMYRS 120 MKHEQMIQAL KIIPCTLCQK VIIHEKNYIK AGTVIRQGYL AGYLCSENKR SNSITKIDSV 180 YFFKNNSINS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-20 | 68 | 123 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.3361s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC149575 | 4e-44 | AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383901.2 | 1e-57 | myb family transcription factor PHL12 | ||||
TrEMBL | B9RXJ2 | 6e-47 | B9RXJ2_RICCO; DNA binding protein, putative | ||||
STRING | POPTR_0004s01060.1 | 1e-57 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9381 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02060.1 | 3e-33 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.3361s0010.1.p |