PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3333s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 241aa MW: 26034.5 Da PI: 4.9116 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 26 | 82 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR +++qle+Le+ + + yps+ r+eL+ +lgL++rq ++WF+ rR k++k SapurV1A.3333s0010.1.p 26 KSKRKMKSASQLEILEKIYSVDTYPSEVVRAELSVQLGLSDRQLQMWFCHRRLKDRK 82 6799***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 13 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-16 | 20 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.244 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-15 | 25 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.4E-16 | 26 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.24E-16 | 26 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEEAAADGGG VEVEAKNKTP GEGESKSKRK MKSASQLEIL EKIYSVDTYP SEVVRAELSV 60 QLGLSDRQLQ MWFCHRRLKD RKAPSVKRPC KESPSLAGMP GGGETGVVAE VGNEHGSGSS 120 PFVLGVDPRR AVGRPTGVAV PRISADVQTM NRYYEPQQSI AELRAIAFVE AQLGEPLRED 180 GPILGMEFDP LPPDAFGAPI DLVSPRSMIF SQDSRGISEL VPFQGVFDWG MKGSCETFYC 240 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3333s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047698.1 | 1e-135 | PREDICTED: uncharacterized protein LOC105141971 isoform X1 | ||||
Refseq | XP_011047701.1 | 1e-137 | PREDICTED: uncharacterized protein LOC105141971 isoform X4 | ||||
Swissprot | Q9FFH1 | 4e-46 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A2K1ZTZ3 | 1e-108 | A0A2K1ZTZ3_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7F7Z2 | 1e-109 | A0A3N7F7Z2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01330.1 | 1e-109 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15781 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.2 | 3e-47 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3333s0010.1.p |