PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3173s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HSF | ||||||||
Protein Properties | Length: 276aa MW: 30040.9 Da PI: 4.8781 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.2 | 8.4e-36 | 10 | 102 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k++++++d+++++++sw+e+g++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+kv ++ weF++++F++ SapurV1A.3173s0010.1.p 10 FLMKTFQLVDDPSTDDVLSWNESGTTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANENFRR 87 9****************************************************************999.........********** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkkse 103 gkkell i+r+k++ SapurV1A.3173s0010.1.p 88 GKKELLAGIRRRKTT 102 ************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.3E-38 | 2 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.45E-33 | 5 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.9E-58 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-20 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.7E-31 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-20 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-20 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MAQRSSPAPF LMKTFQLVDD PSTDDVLSWN ESGTTFVVWK TADFAKDLLP NYFKHNNFSS 60 FVRQLNTYGF RKVVPDKWEF ANENFRRGKK ELLAGIRRRK TTAATQTSPA GKSGGASSSS 120 NSGEDLGSTS TSSPDSKNPG SVETAATQVA DLSIENEQLK KDNDVLSDEL SQAKKQCEDL 180 INFLREYVKV SPDQINRIIG CGGSTCNGGA AVGDNQSEDD DDDENTSDED DHDTDGGEGL 240 KLFGVLLKCQ NKKKRGRDEK TGFGGPRAKE IKSCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-26 | 1 | 104 | 11 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3173s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP014004 | 0.0 | KP014004.1 Populus simonii heat shock transcription factor B1 (HsfB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461200.1 | 1e-150 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 1e-104 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A1L6K4J3 | 1e-150 | A0A1L6K4J3_POPTO; Heat shock transcription factor B1 | ||||
STRING | cassava4.1_013185m | 1e-127 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7114 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-79 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3173s0010.1.p |
Publications ? help Back to Top | |||
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