PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.3085s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 249aa MW: 28084.1 Da PI: 6.7256 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 289.2 | 1.1e-88 | 1 | 247 | 127 | 373 |
GRAS 127 aLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211 +LlqaLa+Rp+g+p++RiTg+++p s+ + + le+++ rL+ + +++++p+ef+ v d++ e+L+v+pgEalaVn+ lqlh SapurV1A.3085s0020.1.p 1 SLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEAVAGRLSAISDKFNIPVEFHG-VPVFAPDVTKETLDVRPGEALAVNFPLQLH 86 79**********************999999**************************.6888999*********************** PP GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +++desv+++++rd +L+++ks +Pkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+ +eri+vE+++l+r+ vnv+ SapurV1A.3085s0020.1.p 87 HTPDESVDVNNPRDGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVETLNYYLAMFESIDVTLPRDRKERISVEQHCLARDMVNVI 173 *************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg+er+erhe ++kW++r+++aGF+++pls+++++ +++llr+++ + y++ e++++++lgWkdr+L+s+SaW SapurV1A.3085s0020.1.p 174 ACEGKERVERHELFRKWKSRFMMAGFEQYPLSSYVNSVIRSLLRTYS-EHYTLVEKDEAMLLGWKDRSLISASAW 247 ***********************************************.55************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.158 | 1 | 229 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-86 | 1 | 247 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
SLLQALAARP GGAPHVRITG IDDPVSKYAR GDGLEAVAGR LSAISDKFNI PVEFHGVPVF 60 APDVTKETLD VRPGEALAVN FPLQLHHTPD ESVDVNNPRD GLLRMIKSFN PKVVTLVEQE 120 SNTNTTPFVT RFVETLNYYL AMFESIDVTL PRDRKERISV EQHCLARDMV NVIACEGKER 180 VERHELFRKW KSRFMMAGFE QYPLSSYVNS VIRSLLRTYS EHYTLVEKDE AMLLGWKDRS 240 LISASAWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-41 | 1 | 248 | 126 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.3085s0020.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011016013.1 | 1e-176 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_011048259.1 | 1e-176 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 1e-133 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A2K2CBZ3 | 1e-173 | A0A2K2CBZ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s44090.1 | 1e-174 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF38800 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-114 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.3085s0020.1.p |
Publications ? help Back to Top | |||
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