PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.3015s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 123aa MW: 13928.9 Da PI: 8.499

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.3015s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.2	2.2e-11	4	90	1	87
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkl 84 f+kvl dv+ + l++p + +e+ gg+ +s++l+++d+ g+ +++ +++ksg vl++GW +Fv++ gL++gD vv+ + SapurV1A.3015s0030.1.p 4 FCKVLRATDVGVK--LSFPTHGLEHLdfGGN--NSVDLRVKDSCGELRVIRC-WKRKSGDhdkPVLSTGWLKFVDDYGLRVGDKVVLLR 87 7888888888876..899999966688766..799******9999999.54444446889********************996 PP -SS CS B3 85 dgr 87 +++ SapurV1A.3015s0030.1.p 88 EDD 90 654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-13	3	92	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.66E-14	3	92	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.55E-14	4	103	No hit	No description
Pfam	PF02362	2.4E-8	4	91	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MEVFCKVLRA TDVGVKLSFP THGLEHLDFG GNNSVDLRVK DSCGELRVIR CWKRKSGDHD 60 KPVLSTGWLK FVDDYGLRVG DKVVLLREDD HNLGSQFRIE AKRKIVLLGR EDWGEVTRAT 120 NY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.3015s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002303154.3	3e-60	uncharacterized protein LOC7480761
Refseq	XP_024452704.1	3e-60	uncharacterized protein LOC112326846
TrEMBL	A0A2K2B047	7e-59	A0A2K2B047_POPTR; Uncharacterized protein
STRING	POPTR_0003s01220.1	2e-60	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12594	4	14

Link Out ? help Back to Top
Phytozome	SapurV1A.3015s0030.1.p