PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2933s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 149aa MW: 16427 Da PI: 7.4355 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 86.1 | 9.8e-27 | 10 | 78 | 2 | 70 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee 70 d+ seq+Cyv+Cn C+t+lavsvP tsl+k+vtvrCGhCt+ll vn++ a + l++++ + SapurV1A.2933s0010.1.p 10 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLYKTVTVRCGHCTNLLPVNMRGLLFPSANQFPLGHNFYSP 78 57789*****************************************99988777666666677776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.0E-27 | 14 | 69 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MSSSSSLSLD HLPPSEQLCY VHCNICDTVL AVSVPCTSLY KTVTVRCGHC TNLLPVNMRG 60 LLFPSANQFP LGHNFYSPSH NLLDGQIPNP TPNFLINQTN VNDFSLTIRG MAAPELPRPP 120 VMNRRENHRI LLFSLLLFCQ ESLFTSLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2933s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018257.1 | 3e-71 | PREDICTED: protein YABBY 4-like | ||||
Swissprot | Q01JG2 | 8e-29 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 8e-29 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A438ESG8 | 4e-70 | A0A438ESG8_VITVI; Protein YABBY 5 | ||||
STRING | POPTR_0001s00240.1 | 4e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 2e-24 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2933s0010.1.p |
Publications ? help Back to Top | |||
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