PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2929s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 794aa MW: 91291.8 Da PI: 6.4525

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2929s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	103.3	2.2e-32	86	177	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+++++eHn SapurV1A.2929s0020.1.p 86 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRVITRVGCKASLSVKMQDSGKWVVSSFVKEHN 172 9*************************************998888545677889**************************** PP FAR1 87 Helap 91 Hel+p SapurV1A.2929s0020.1.p 173 HELVP 177 *86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-30	86	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.1E-33	298	390	IPR018289	MULE transposase domain
Pfam	PF04434	1.2E-11	566	612	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.905	578	614	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.9E-9	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MENEVLEFDI GLGSGADDED DDDADAVDID IDDDLPSTHP LHLTTSQNSA PISTSAPRIY 60 LPEGDLSDLE PYEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA 120 KEGFRNLNEK RTKDREIKRP RVITRVGCKA SLSVKMQDSG KWVVSSFVKE HNHELVPPDQ 180 VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR 240 QRSMEGDIQL LLDYLRQMHS ENPDFFYALQ EDDGQFTGNV LWADPRARAN YSYFGDTVTF 300 DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC AFILNETEAS FVWLFQTWLT AMSGHHPLSI 360 TTDHDAVIRL AIMQVFPETR HRFCKWHIFK KCQEKLSHVL LKHPTFEAEF HKCVNLTELI 420 EEFESCWLSL VDRYELRDHE WLQTIYSDRR QWVPVYLRDA FFAEMSITQR SDSMNSYFDG 480 YVNASTNLNH FFKLYEKAIE SRNEKEVKAD YDTMNTNPVL RTPSPMEKQA SGLYTRKLFV 540 RFQEELVGTL TFMASKAEDD GESITYQVSK FGEDHKAYHV KFNVLEMKAT CSCQMFEFSG 600 LLCRHVLTVF RVTNVLTLPS RYILKRWTRN AKSNVILEER PTDIYTGYLE SHTVRYNTLR 660 HEAFKFVEEG SKSLDTYNVA MGVLQEATSR VALAKKNEGR ASNVDGRNNG DSARSGIRAN 720 YTSGDHLGIS DQPLSEEDMD KKIQELRDEL EYTNRKCEVY RANLLSVLKD IEDHKLQLSI 780 KVQSLKISMK DSI*

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MENEVLEFDI GLGSGADDED DDDADAVDID IDDDLPSTHP LHLTTSQNSA PISTSAPRIY  60
LPEGDLSDLE PYEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA  120
KEGFRNLNEK RTKDREIKRP RVITRVGCKA SLSVKMQDSG KWVVSSFVKE HNHELVPPDQ  180
VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR  240
QRSMEGDIQL LLDYLRQMHS ENPDFFYALQ EDDGQFTGNV LWADPRARAN YSYFGDTVTF  300
DTTYRSNRYR LPFAPFTGVN HHGQPVLFGC AFILNETEAS FVWLFQTWLT AMSGHHPLSI  360
TTDHDAVIRL AIMQVFPETR HRFCKWHIFK KCQEKLSHVL LKHPTFEAEF HKCVNLTELI  420
EEFESCWLSL VDRYELRDHE WLQTIYSDRR QWVPVYLRDA FFAEMSITQR SDSMNSYFDG  480
YVNASTNLNH FFKLYEKAIE SRNEKEVKAD YDTMNTNPVL RTPSPMEKQA SGLYTRKLFV  540
RFQEELVGTL TFMASKAEDD GESITYQVSK FGEDHKAYHV KFNVLEMKAT CSCQMFEFSG  600
LLCRHVLTVF RVTNVLTLPS RYILKRWTRN AKSNVILEER PTDIYTGYLE SHTVRYNTLR  660
HEAFKFVEEG SKSLDTYNVA MGVLQEATSR VALAKKNEGR ASNVDGRNNG DSARSGIRAN  720
YTSGDHLGIS DQPLSEEDMD KKIQELRDEL EYTNRKCEVY RANLLSVLKD IEDHKLQLSI  780
KVQSLKISMK DSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2929s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006384877.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1X9IW98	0.0	A0A1X9IW98_POPTO; Uncharacterized protein
STRING	POPTR_0004s21880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	SapurV1A.2929s0020.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]