PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2902s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TCP

Protein Properties

Length: 274aa MW: 27976.3 Da PI: 10.3893

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2902s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.8	1.9e-38	36	126	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg. 88 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ +++ns+s SapurV1A.2902s0010.1.p 36 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAGGNSNSIs 122 79******************************************************************8883333333333222222 PP TCP 89 ...k 89 + SapurV1A.2902s0010.1.p 123 slsS 126 2220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	41	95	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.1E-33	41	128	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSDNSGAVNN GALIDPQRNQ PPGSGGGGAT NGALVVKKPP SKDRHSKVDG RGRRIRMPII 60 CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTVSV SVRAGGNSNS 120 ISSLSSNNVH SAASLDHKPL LGPAPFILGK RMRPEEDGNG GKDDGGVIVG PTIGSLMGPT 180 STAAAGSGGF WALQTRPDFW GFAAAPPEMV VQPTAVQQSS LFMHQQHAAA AAAAAMGEAS 240 AARLGNYLPG HLNLLASLSG GTGSSGRREE DQR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2902s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022018.1	1e-155	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	9e-93	TCP7_ARATH; Transcription factor TCP7
TrEMBL	B9H5Q1	1e-142	B9H5Q1_POPTR; TCP family protein
STRING	POPTR_0005s09250.2	1e-142	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-57	TCP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.2902s0010.1.p