PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2745s0010.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C3H | ||||||||
Protein Properties | Length: 577aa MW: 64569.8 Da PI: 9.2175 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.2 | 4.5e-06 | 174 | 193 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f G C++G+ C+F H SapurV1A.2745s0010.2.p 174 LCKDFVV-GRCRRGNHCQFLH 193 8******.************* PP | |||||||
2 | zf-CCCH | 17.5 | 7.5e-06 | 234 | 252 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C++f++ G C++G++C+++H SapurV1A.2745s0010.2.p 234 CNDFLK-GSCRRGESCRYSH 252 ******.************* PP | |||||||
3 | zf-CCCH | 20.5 | 8.2e-07 | 297 | 317 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa+ G C+ G C+F+H+ SapurV1A.2745s0010.2.p 297 PCKFFAA-GNCRNGKYCRFSHD 317 7**9999.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.001 | 169 | 195 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.77 | 169 | 196 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 171 | 194 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-6 | 173 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.024 | 228 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.591 | 228 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0019 | 294 | 318 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 295 | 317 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 297 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MKKGGAASVK MSGSGRKRSS KWDLKEGSRM SFEDVEDNTW PGKAGISFRD KESRRDWLSP 60 EAAGGTRSKW SAMEPLPGRR SSRRDDNIDE DRGRTSKATY EDDSYGTRMS PGLDEWRQKS 120 FRNSPKNEYK RTRRSRSRSR SRSRSRSRSP VHGFGRESGA YDRSRSISGV SAQLCKDFVV 180 GRCRRGNHCQ FLHQDTETCE DDWERPRKAA ASKYPISHDS KQYPIGSGRS ADCCNDFLKG 240 SCRRGESCRY SHHGASDPSS RGSANEGIRE RDNDRRHRYA SPERRAERET RRAADIPCKF 300 FAAGNCRNGK YCRFSHDDET LASPDKRSRD GRWPPSQNSD DVDKSWNGPK WSESHSSDAA 360 KLSENKNEKL DAPEPRLSVR CMEDGWGLNL VENKTHNNPP TKEVVEIDKK ESLPWKTENA 420 DVSEHRAPEN WIGDMEMSPD WNYRLQPSNH INKGEHASLP SCELQNGSGQ TRDAPAIMPP 480 MLNETSSIQQ GYNLKEVGGS ALPHDDGVTG KTAGSYINIS ANFLATQSFN KNGLSSNASP 540 IPNLNATGQI QEAILTNHPR GGTPIPNLNA VGQIQEA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 147 | RSRSRSRSRSR |
2 | 139 | 147 | RSRSRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2745s0010.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213493 | 0.0 | AC213493.1 Populus trichocarpa clone POP014-L13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310510.2 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X2 | ||||
TrEMBL | B9HEQ3 | 0.0 | B9HEQ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s03970.2 | 0.0 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2745s0010.2.p |